SCOPe 2.04: Family d.6.1.1: Prion-like

Lineage for Family d.6.1.1: Prion-like

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.6: Prion-like [54097] (1 superfamily)
   beta-alpha-beta-alpha(2); antiparallel beta-ribbon

4. Superfamily d.6.1: Prion-like [54098] (1 family)

5. Family d.6.1.1: Prion-like [54099] (3 proteins)

Proteins:

1. Prion protein domain [54100] (14 species)

   1. Species African clawed frog (Xenopus laevis) [TaxId:8355] [117768] (1 PDB entry)
      Uniprot Q5S1W7 43-171

   2. Species American elk (Cervus elaphus nelsoni) [TaxId:9864] [117765] (1 PDB entry)
      SQ 67986 124-234

   3. Species Cat (Felis catus) [TaxId:9685] [117769] (1 PDB entry)
      Uniprot O18754 104-214

   4. Species Chicken (Gallus gallus) [TaxId:9031] [117766] (1 PDB entry)
      Uniprot P27177 132-248

   5. Species Cow (Bos taurus) [TaxId:9913] [54104] (4 PDB entries)

   6. Species Dog (Canis familiaris) [TaxId:9615] [117770] (1 PDB entry)
      Uniprot O46501 124-233

   7. Species Golden hamster (Mesocricetus auratus) [TaxId:10036] [54102] (1 PDB entry)

   8. Species Human (Homo sapiens) [TaxId:9606] [54103] (18 PDB entries)

   9. Species Macropus eugenii [TaxId:9315] [255344] (1 PDB entry)

   10. Species Mouse (Mus musculus) [TaxId:10090] [54101] (4 PDB entries)
       Uniprot P04925 120-231

   11. Species Pig (Sus scrofa) [TaxId:9823] [117771] (1 PDB entry)
       Uniprot P49927 125-235

   12. Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [189522] (1 PDB entry)

   13. Species Red-eared slider turtle (Trachemys scripta) [TaxId:34903] [117767] (1 PDB entry)
       Uniprot Q9I9C0 141-248

   14. Species Sheep (Ovis aries) [TaxId:9940] [102729] (6 PDB entries)
       Uniprot P23907 124-234 ! Uniprot P23907 122-234 ! Uniprot P23907 127-228

2. Prion-like protein Doppel [64207] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [82572] (1 PDB entry)

   2. Species Mouse (Mus musculus) [TaxId:10090] [64208] (1 PDB entry)

3. automated matches [191016] (6 species)
   not a true protein

   1. Species Golden hamster (Mesocricetus auratus) [TaxId:10036] [255433] (1 PDB entry)

   2. Species Horse (Equus caballus) [TaxId:9796] [255378] (1 PDB entry)

   3. Species Human (Homo sapiens) [TaxId:9606] [188783] (8 PDB entries)

   4. Species Mouse (Mus musculus) [TaxId:10090] [234629] (12 PDB entries)

   5. Species Myodes glareolus [TaxId:447135] [255321] (1 PDB entry)

   6. Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [226669] (6 PDB entries)

More info for Family d.6.1.1: Prion-like

Timeline for Family d.6.1.1: Prion-like:

• Family d.6.1.1: Prion-like first appeared (with stable ids) in SCOP 1.55, called Family d.6.1.1: Prion protein domain
  
• Family d.6.1.1: Prion-like appears in SCOPe 2.03
  
• Family d.6.1.1: Prion-like appears in SCOPe 2.05
  
• Family d.6.1.1: Prion-like appears in the current release, SCOPe 2.08