Lineage for Protein: Ribokinase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2137471Fold c.72: Ribokinase-like [53612] (3 superfamilies)
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. 2137472Superfamily c.72.1: Ribokinase-like [53613] (6 families) (S)
    has extra strand located between strands 2 and 3
  5. 2137473Family c.72.1.1: Ribokinase-like [53614] (10 protein domains)
    automatically mapped to Pfam PF00294
  6. 2137541Protein Ribokinase [53615] (3 species)

Species:

  1. 2137542Escherichia coli [TaxId:562] [53616] (5 PDB entries)
    1. Domains for 1gqt:
      1. 2137549Domain d1gqta_: 1gqt A: [65472]
        complexed with acp, cs, rib
      2. 2137550Domain d1gqtb_: 1gqt B: [65473]
        complexed with acp, cs, rib
      3. 2137551Domain d1gqtc_: 1gqt C: [65474]
        complexed with acp, cs, rib
      4. 2137552Domain d1gqtd_: 1gqt D: [65475]
        complexed with acp, cs, rib
    2. Domains for 1rk2:
      1. 2137545Domain d1rk2a_: 1rk2 A: [34930]
        complexed with adp, alf, mg, rib
      2. 2137546Domain d1rk2b_: 1rk2 B: [34931]
        complexed with adp, alf, mg, rib
      3. 2137547Domain d1rk2c_: 1rk2 C: [34932]
        complexed with adp, alf, mg, rib
      4. 2137548Domain d1rk2d_: 1rk2 D: [34933]
        complexed with adp, alf, mg, rib
    3. Domain for 1rka:
    4. Domain for 1rkd:
    5. Domain for 1rks:
  2. 2137554Human (Homo sapiens) [TaxId:9606] [142709] (9 PDB entries)
    Uniprot Q9H477 15-322
    1. Domains for 2fv7:
      1. 2137555Domain d2fv7a1: 2fv7 A:15-322 [134197]
        complexed with adp, mg, na, unx
      2. 2137556Domain d2fv7b_: 2fv7 B: [134198]
        automated match to d2fv7a1
        complexed with adp, mg, na, unx
    2. Domains for 5byc:
      1. 2275185Domain d5bycb1: 5byc B:11-322 [318486]
        Other proteins in same PDB: d5byca2, d5bycb2
        automated match to d2fv7a1
        complexed with na
      2. 2275290Domain d5byca1: 5byc A:10-322 [318591]
        Other proteins in same PDB: d5byca2, d5bycb2
        automated match to d2fv7a1
        complexed with na
    3. Domains for 5byd:
      1. 2275114Domain d5byda1: 5byd A:15-322 [318415]
        Other proteins in same PDB: d5byda2, d5bydb2
        automated match to d2fv7a1
        complexed with k, na
      2. 2275349Domain d5bydb1: 5byd B:15-322 [318650]
        Other proteins in same PDB: d5byda2, d5bydb2
        automated match to d2fv7a1
        complexed with k, na
    4. Domains for 5bye:
      1. 2275155Domain d5byeb1: 5bye B:15-322 [318456]
        Other proteins in same PDB: d5byea2, d5byeb2
        automated match to d2fv7a1
        complexed with cl, na
      2. 2275166Domain d5byea1: 5bye A:11-322 [318467]
        Other proteins in same PDB: d5byea2, d5byeb2
        automated match to d2fv7a1
        complexed with cl, na
    5. Domains for 5byf:
      1. 2275344Domain d5byfa1: 5byf A:13-322 [318645]
        Other proteins in same PDB: d5byfa2, d5byfb2
        automated match to d2fv7a1
        complexed with amp, cl, na
      2. 2275366Domain d5byfb1: 5byf B:14-322 [318667]
        Other proteins in same PDB: d5byfa2, d5byfb2
        automated match to d2fv7a1
        complexed with amp, cl, na
    6. Domains for 5c3y:
      1. 2275051Domain d5c3ye1: 5c3y E:14-322 [318352]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      2. 2275054Domain d5c3yj1: 5c3y J:14-322 [318355]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      3. 2275116Domain d5c3yb1: 5c3y B:14-322 [318417]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      4. 2275118Domain d5c3yc1: 5c3y C:14-322 [318419]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      5. 2275174Domain d5c3yd1: 5c3y D:14-322 [318475]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      6. 2275265Domain d5c3yk1: 5c3y K:15-322 [318566]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      7. 2275294Domain d5c3yi1: 5c3y I:15-322 [318595]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      8. 2275300Domain d5c3yl1: 5c3y L:14-322 [318601]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      9. 2275339Domain d5c3yh1: 5c3y H:14-322 [318640]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      10. 2275353Domain d5c3yf1: 5c3y F:15-322 [318654]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      11. 2275362Domain d5c3yg1: 5c3y G:14-322 [318663]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
      12. 2275373Domain d5c3ya_: 5c3y A: [318674]
        Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
        automated match to d2fv7a1
        complexed with an2, na
    7. Domains for 5c3z:
      1. 2275243Domain d5c3za1: 5c3z A:11-322 [318544]
        Other proteins in same PDB: d5c3za2, d5c3zb2
        automated match to d2fv7a1
        complexed with acp, cl, na
      2. 2275308Domain d5c3zb1: 5c3z B:10-322 [318609]
        Other proteins in same PDB: d5c3za2, d5c3zb2
        automated match to d2fv7a1
        complexed with acp, cl, na
    8. Domains for 5c40:
      1. 2275209Domain d5c40b1: 5c40 B:15-322 [318510]
        Other proteins in same PDB: d5c40a2, d5c40b2
        automated match to d2fv7a1
        complexed with acp, na, po4
      2. 2275374Domain d5c40a1: 5c40 A:15-322 [318675]
        Other proteins in same PDB: d5c40a2, d5c40b2
        automated match to d2fv7a1
        complexed with acp, na, po4
    9. Domains for 5c41:
      1. 2275057Domain d5c41c1: 5c41 C:14-322 [318358]
        Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
        automated match to d2fv7a1
        complexed with acp, na, po4
      2. 2275059Domain d5c41b1: 5c41 B:15-322 [318360]
        Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
        automated match to d2fv7a1
        complexed with acp, na, po4
      3. 2275087Domain d5c41d1: 5c41 D:14-322 [318388]
        Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
        automated match to d2fv7a1
        complexed with acp, na, po4
      4. 2275145Domain d5c41a1: 5c41 A:14-322 [318446]
        Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
        automated match to d2fv7a1
        complexed with acp, na, po4
  3. 2137557Thermotoga maritima [TaxId:2336] [110706] (1 PDB entry)
    Uniprot Q9X055

More info for Protein Ribokinase from c.72.1.1: Ribokinase-like

Timeline for Protein Ribokinase from c.72.1.1: Ribokinase-like: