SCOPe 2.08: Protein: Ribokinase

Lineage for Protein: Ribokinase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.72: Ribokinase-like [53612] (3 superfamilies)
core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
potential superfamily: members of this fold have similar functions but different ATP-binding sites

Superfamily c.72.1: Ribokinase-like [53613] (6 families)
has extra strand located between strands 2 and 3
Family c.72.1.1: Ribokinase-like [53614] (10 proteins)
automatically mapped to Pfam PF00294
Protein Ribokinase [53615] (3 species)

Species:

Escherichia coli [TaxId:562] [53616] (5 PDB entries)
1. Domains for 1gqt:
  1. Domain d1gqta_: 1gqt A: [65472]
    complexed with acp, cs, rib
  2. Domain d1gqtb_: 1gqt B: [65473]
    complexed with acp, cs, rib
  3. Domain d1gqtc_: 1gqt C: [65474]
    complexed with acp, cs, rib
  4. Domain d1gqtd_: 1gqt D: [65475]
    complexed with acp, cs, rib
2. Domains for 1rk2:
  1. Domain d1rk2a_: 1rk2 A: [34930]
    complexed with adp, alf, mg, rib
  2. Domain d1rk2b_: 1rk2 B: [34931]
    complexed with adp, alf, mg, rib
  3. Domain d1rk2c_: 1rk2 C: [34932]
    complexed with adp, alf, mg, rib
  4. Domain d1rk2d_: 1rk2 D: [34933]
    complexed with adp, alf, mg, rib
3. Domain for 1rka:
  - Domain d1rkaa_: 1rka A: [34929]
4. Domain for 1rkd:
  - Domain d1rkda_: 1rkd A: [34928]
    complexed with adp, po4, rib
5. Domain for 1rks:
  - Domain d1rksa_: 1rks A: [34934]
    complexed with po4, rib

Human (Homo sapiens) [TaxId:9606] [142709] (11 PDB entries)
Uniprot Q9H477 15-322

Domains for 2fv7:
1. Domain d2fv7a1: 2fv7 A:15-322 [134197]
  complexed with adp, mg, na, unx
2. Domain d2fv7b_: 2fv7 B: [134198]
  automated match to d2fv7a1
  complexed with adp, mg, na, unx
Domains for 5byc:
1. Domain d5byca1: 5byc A:10-322 [318591]
  Other proteins in same PDB: d5byca2, d5bycb2
  automated match to d2fv7a1
  complexed with na
2. Domain d5bycb1: 5byc B:11-322 [318486]
  Other proteins in same PDB: d5byca2, d5bycb2
  automated match to d2fv7a1
  complexed with na
Domains for 5byd:
1. Domain d5byda1: 5byd A:15-322 [318415]
  Other proteins in same PDB: d5byda2, d5bydb2
  automated match to d2fv7a1
  complexed with k, na
2. Domain d5bydb1: 5byd B:15-322 [318650]
  Other proteins in same PDB: d5byda2, d5bydb2
  automated match to d2fv7a1
  complexed with k, na
Domains for 5bye:
1. Domain d5byea1: 5bye A:11-322 [318467]
  Other proteins in same PDB: d5byea2, d5byeb2
  automated match to d2fv7a1
  complexed with cl, na
2. Domain d5byeb1: 5bye B:15-322 [318456]
  Other proteins in same PDB: d5byea2, d5byeb2
  automated match to d2fv7a1
  complexed with cl, na
Domains for 5byf:
1. Domain d5byfa1: 5byf A:13-322 [318645]
  Other proteins in same PDB: d5byfa2, d5byfb2
  automated match to d2fv7a1
  complexed with amp, cl, na
2. Domain d5byfb1: 5byf B:14-322 [318667]
  Other proteins in same PDB: d5byfa2, d5byfb2
  automated match to d2fv7a1
  complexed with amp, cl, na

Domains for 5c3y:

Domain d5c3ya_: 5c3y A: [318674]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yb1: 5c3y B:14-322 [318417]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yc1: 5c3y C:14-322 [318419]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yd1: 5c3y D:14-322 [318475]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3ye1: 5c3y E:14-322 [318352]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yf1: 5c3y F:15-322 [318654]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yg1: 5c3y G:14-322 [318663]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yh1: 5c3y H:14-322 [318640]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yi1: 5c3y I:15-322 [318595]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yj1: 5c3y J:14-322 [318355]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yk1: 5c3y K:15-322 [318566]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domain d5c3yl1: 5c3y L:14-322 [318601]
Other proteins in same PDB: d5c3yb2, d5c3yc2, d5c3yd2, d5c3ye2, d5c3yf2, d5c3yg2, d5c3yh2, d5c3yi2, d5c3yj2, d5c3yk2, d5c3yl2
automated match to d2fv7a1
complexed with an2, na

Domains for 5c3z:
1. Domain d5c3za1: 5c3z A:11-322 [318544]
  Other proteins in same PDB: d5c3za2, d5c3zb2
  automated match to d2fv7a1
  complexed with acp, cl, na
2. Domain d5c3zb1: 5c3z B:10-322 [318609]
  Other proteins in same PDB: d5c3za2, d5c3zb2
  automated match to d2fv7a1
  complexed with acp, cl, na
Domains for 5c40:
1. Domain d5c40a1: 5c40 A:15-322 [318675]
  Other proteins in same PDB: d5c40a2, d5c40b2
  automated match to d2fv7a1
  complexed with acp, na, po4
2. Domain d5c40b1: 5c40 B:15-322 [318510]
  Other proteins in same PDB: d5c40a2, d5c40b2
  automated match to d2fv7a1
  complexed with acp, na, po4
Domains for 5c41:
1. Domain d5c41a1: 5c41 A:14-322 [318446]
  Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
  automated match to d2fv7a1
  complexed with acp, na, po4
2. Domain d5c41b1: 5c41 B:15-322 [318360]
  Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
  automated match to d2fv7a1
  complexed with acp, na, po4
3. Domain d5c41c1: 5c41 C:14-322 [318358]
  Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
  automated match to d2fv7a1
  complexed with acp, na, po4
4. Domain d5c41d1: 5c41 D:14-322 [318388]
  Other proteins in same PDB: d5c41a2, d5c41b2, d5c41c2, d5c41d2
  automated match to d2fv7a1
  complexed with acp, na, po4
Domains for 6wjz:
1. Domain d6wjza1: 6wjz A:14-322 [403905]
  Other proteins in same PDB: d6wjza2, d6wjzb2
  automated match to d5c3ya_
  complexed with a12, gol, mg, na
2. Domain d6wjzb1: 6wjz B:14-322 [403922]
  Other proteins in same PDB: d6wjza2, d6wjzb2
  automated match to d5c3ya_
  complexed with a12, gol, mg, na
Domains for 6wk0:
1. Domain d6wk0a1: 6wk0 A:14-322 [403967]
  Other proteins in same PDB: d6wk0a2, d6wk0b2, d6wk0c2, d6wk0d2
  automated match to d5c3ya_
  complexed with acp, na, rib
2. Domain d6wk0b1: 6wk0 B:14-322 [403920]
  Other proteins in same PDB: d6wk0a2, d6wk0b2, d6wk0c2, d6wk0d2
  automated match to d5c3ya_
  complexed with acp, na, rib
3. Domain d6wk0c1: 6wk0 C:14-322 [403944]
  Other proteins in same PDB: d6wk0a2, d6wk0b2, d6wk0c2, d6wk0d2
  automated match to d5c3ya_
  complexed with acp, na, rib
4. Domain d6wk0d1: 6wk0 D:14-322 [404091]
  Other proteins in same PDB: d6wk0a2, d6wk0b2, d6wk0c2, d6wk0d2
  automated match to d5c3ya_
  complexed with acp, na, rib

Thermotoga maritima [TaxId:2336] [110706] (1 PDB entry)
Uniprot Q9X055
- Domains for 1vm7:
  1. Domain d1vm7a_: 1vm7 A: [108884]
    Structural genomics target
  2. Domain d1vm7b_: 1vm7 B: [108885]
    Structural genomics target

More info for Protein Ribokinase from c.72.1.1: Ribokinase-like

Timeline for Protein Ribokinase from c.72.1.1: Ribokinase-like:

Protein Ribokinase from c.72.1.1: Ribokinase-like first appeared (with stable ids) in SCOP 1.55
Protein Ribokinase from c.72.1.1: Ribokinase-like appears in SCOPe 2.07