SCOPe 2.08: Domain d5byeb1: 5bye B:15-322

Lineage for d5byeb1 (5bye B:15-322)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.1: Ribokinase-like [53613] (6 families)
   has extra strand located between strands 2 and 3

5. Family c.72.1.1: Ribokinase-like [53614] (10 proteins)
   automatically mapped to Pfam PF00294

6. Protein Ribokinase [53615] (3 species)

7. Species Human (Homo sapiens) [TaxId:9606] [142709] (11 PDB entries)
   Uniprot Q9H477 15-322

8. Domain d5byeb1: 5bye B:15-322 [318456]
   Other proteins in same PDB: d5byea2, d5byeb2
   automated match to d2fv7a1
   complexed with cl, na

Details for d5byeb1

PDB Entry: 5bye, 1.75 Å

PDB Description: crystal structure of human ribokinase in p212121 spacegroup

PDB Compounds: (B:) ribokinase

SCOPe Domain Sequences for d5byeb1:

Sequence, based on SEQRES records:

>d5byeb1 c.72.1.1 (B:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]}
vaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcvqaarlgamtsmvck
vgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqniivivaganlllnte
dlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpapaiadldpqfytlsd
vfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaegcvvlsqtepepkhi
ptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaavsvqaagtqssypyk
kdlpltlf

Sequence, based on observed residues (ATOM records):

>d5byeb1 c.72.1.1 (B:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]}
vaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcvqaarlgamtsmvck
vgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqniivivaganlllnte
dlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpapaiadldpqfytlsd
vfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaegcvvlsqtepepkhi
pagdsfvgalafylayypnlsledmlnrsnfiaavsvqaagtqssypykkdlpltlf

Timeline for d5byeb1:

• d5byeb1 first appeared in SCOPe 2.06
  
• d5byeb1 appears in SCOPe 2.07