PDB entry 5c41

View 5c41 on RCSB PDB site
Description: Crystal structure of human ribokinase in complex with AMPPCP in P21 spacegroup and with 4 protomers
Class: transferase
Keywords: Transferase
Deposited on 2015-06-17, released 2016-06-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-04-26, with a file datestamp of 2017-04-21.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribokinase
    Species: Homo sapiens [TaxId:9606]
    Gene: RBKS, RBSK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9H477 (Start-321)
      • expression tag (322-329)
    Domains in SCOPe 2.08: d5c41a1, d5c41a2
  • Chain 'B':
    Compound: ribokinase
    Species: Homo sapiens [TaxId:9606]
    Gene: RBKS, RBSK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9H477 (Start-321)
      • expression tag (322-323)
    Domains in SCOPe 2.08: d5c41b1, d5c41b2
  • Chain 'C':
    Compound: ribokinase
    Species: Homo sapiens [TaxId:9606]
    Gene: RBKS, RBSK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9H477 (Start-321)
      • expression tag (322-329)
    Domains in SCOPe 2.08: d5c41c1, d5c41c2
  • Chain 'D':
    Compound: ribokinase
    Species: Homo sapiens [TaxId:9606]
    Gene: RBKS, RBSK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9H477 (Start-321)
      • expression tag (322-328)
    Domains in SCOPe 2.08: d5c41d1, d5c41d2
  • Heterogens: ACP, NA, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5c41A (A:)
maasgepqrqwqeevaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcv
qaarlgamtsmvckvgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqni
ivivaganlllntedlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpap
aiadldpqfytlsdvfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaeg
cvvlsqtepepkhiptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaav
svqaagtqssypykkdlpltlflehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c41A (A:)
evaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcvqaarlgamtsmvc
kvgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqniivivaganlllnt
edlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpapaiadldpqfytls
dvfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaegcvvlsqtepepkh
iptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaavsvqaagtqssypy
kkdlpltlflehhhhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5c41B (B:)
maasgepqrqwqeevaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcv
qaarlgamtsmvckvgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqni
ivivaganlllntedlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpap
aiadldpqfytlsdvfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaeg
cvvlsqtepepkhiptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaav
svqaagtqssypykkdlpltlflehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c41B (B:)
vaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcvqaarlgamtsmvck
vgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqniivivaganlllnte
dlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpapaiadldpqfytlsd
vfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaegcvvlsqtepepkhi
ptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaavsvqaagtqssypyk
kdlpltlfle

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5c41C (C:)
maasgepqrqwqeevaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcv
qaarlgamtsmvckvgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqni
ivivaganlllntedlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpap
aiadldpqfytlsdvfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaeg
cvvlsqtepepkhiptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaav
svqaagtqssypykkdlpltlflehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c41C (C:)
evaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcvqaarlgamtsmvc
kvgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqniivivaganlllnt
edlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpapaiadldpqfytls
dvfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaegcvvlsqtepepkh
iptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaavsvqaagtqssypy
kkdlpltlflehhhhhh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5c41D (D:)
maasgepqrqwqeevaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcv
qaarlgamtsmvckvgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqni
ivivaganlllntedlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpap
aiadldpqfytlsdvfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaeg
cvvlsqtepepkhiptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaav
svqaagtqssypykkdlpltlflehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c41D (D:)
evaavvvvgscmtdlvsltsrlpktgetihghkffigfggkganqcvqaarlgamtsmvc
kvgkdsfgndyienlkqndisteftyqtkdaatgtasiivnnegqniivivaganlllnt
edlraaanvisrakvmvcqleitpatslealtmarrsgvktlfnpapaiadldpqfytls
dvfccneseaeiltgltvgsaadageaalvllkrgcqvviitlgaegcvvlsqtepepkh
iptekvkavdttgagdsfvgalafylayypnlsledmlnrsnfiaavsvqaagtqssypy
kkdlpltlflehhhhh