SCOPe 2.03: Protein: Alpha chain

Lineage for Protein: Alpha chain

Root: SCOPe 2.03
Class a: All alpha proteins [46456] (284 folds)
Fold a.89: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain [48080] (1 superfamily)
multihelical bundle; contains buried central helix
Superfamily a.89.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain [48081] (2 families)
Family a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain [48082] (2 proteins)
C-terminal domain is all-alpha
Protein Alpha chain [48083] (3 species)

Species:

Methanobacterium thermoautotrophicum [TaxId:145262] [48084] (11 PDB entries)

Domains for 1hbm:
1. Domain d1hbma1: 1hbm A:270-549 [60888]
  Other proteins in same PDB: d1hbma2, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd2, d1hbme1, d1hbme2, d1hbmf_
  complexed with cl, f43, gol, mg, na, sht, zn
2. Domain d1hbmd1: 1hbm D:270-549 [60893]
  Other proteins in same PDB: d1hbma2, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd2, d1hbme1, d1hbme2, d1hbmf_
  complexed with cl, f43, gol, mg, na, sht, zn
Domains for 1hbn:
1. Domain d1hbna1: 1hbn A:270-549 [60898]
  Other proteins in same PDB: d1hbna2, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd2, d1hbne1, d1hbne2, d1hbnf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbnd1: 1hbn D:270-549 [60903]
  Other proteins in same PDB: d1hbna2, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd2, d1hbne1, d1hbne2, d1hbnf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1hbo:
1. Domain d1hboa1: 1hbo A:270-549 [60908]
  Other proteins in same PDB: d1hboa2, d1hbob1, d1hbob2, d1hboc_, d1hbod2, d1hboe1, d1hboe2, d1hbof_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbod1: 1hbo D:270-549 [60913]
  Other proteins in same PDB: d1hboa2, d1hbob1, d1hbob2, d1hboc_, d1hbod2, d1hboe1, d1hboe2, d1hbof_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1hbu:
1. Domain d1hbua1: 1hbu A:270-549 [60918]
  Other proteins in same PDB: d1hbua2, d1hbub1, d1hbub2, d1hbuc_, d1hbud2, d1hbue1, d1hbue2, d1hbuf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbud1: 1hbu D:270-549 [60923]
  Other proteins in same PDB: d1hbua2, d1hbub1, d1hbub2, d1hbuc_, d1hbud2, d1hbue1, d1hbue2, d1hbuf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1mro:
1. Domain d1mroa1: 1mro A:270-549 [18525]
  Other proteins in same PDB: d1mroa2, d1mrob1, d1mrob2, d1mroc_, d1mrod2, d1mroe1, d1mroe2, d1mrof_
  complexed with com, f43, gol, na, tp7, zn
2. Domain d1mrod1: 1mro D:270-549 [18526]
  Other proteins in same PDB: d1mroa2, d1mrob1, d1mrob2, d1mroc_, d1mrod2, d1mroe1, d1mroe2, d1mrof_
  complexed with com, f43, gol, na, tp7, zn

Domains for 3m1v:

Domain d3m1va2: 3m1v A:270-549 [199770]
Other proteins in same PDB: d3m1va1, d3m1vb1, d3m1vb2, d3m1vc_, d3m1vd1, d3m1ve1, d3m1ve2, d3m1vf_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, tp7, zn

Domain d3m1vd2: 3m1v D:270-549 [199774]
Other proteins in same PDB: d3m1va1, d3m1vb1, d3m1vb2, d3m1vc_, d3m1vd1, d3m1ve1, d3m1ve2, d3m1vf_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, tp7, zn

Domains for 3m2r:

Domain d3m2ra2: 3m2r A:270-549 [199778]
Other proteins in same PDB: d3m2ra1, d3m2rb1, d3m2rb2, d3m2rc_, d3m2rd1, d3m2re1, d3m2re2, d3m2rf_
automated match to d1hbna1
complexed with com, edo, f43, mg, peg, tp7, tpz, zn

Domain d3m2rd2: 3m2r D:270-549 [199782]
Other proteins in same PDB: d3m2ra1, d3m2rb1, d3m2rb2, d3m2rc_, d3m2rd1, d3m2re1, d3m2re2, d3m2rf_
automated match to d1hbna1
complexed with com, edo, f43, mg, peg, tp7, tpz, zn

Domains for 3m2u:

Domain d3m2ua2: 3m2u A:270-549 [199786]
Other proteins in same PDB: d3m2ua1, d3m2ub1, d3m2ub2, d3m2uc_, d3m2ud1, d3m2ue1, d3m2ue2, d3m2uf_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, tp7, txz, zn

Domain d3m2ud2: 3m2u D:270-549 [199790]
Other proteins in same PDB: d3m2ua1, d3m2ub1, d3m2ub2, d3m2uc_, d3m2ud1, d3m2ue1, d3m2ue2, d3m2uf_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, tp7, txz, zn

Domains for 3m2v:

Domain d3m2va2: 3m2v A:270-549 [199794]
Other proteins in same PDB: d3m2va1, d3m2vb1, d3m2vb2, d3m2vc_, d3m2vd1, d3m2ve1, d3m2ve2, d3m2vf_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, tp7, xp8, zn

Domain d3m2vd2: 3m2v D:270-549 [199798]
Other proteins in same PDB: d3m2va1, d3m2vb1, d3m2vb2, d3m2vc_, d3m2vd1, d3m2ve1, d3m2ve2, d3m2vf_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, tp7, xp8, zn

Domains for 3m30:

Domain d3m30a2: 3m30 A:270-549 [199802]
Other proteins in same PDB: d3m30a1, d3m30b1, d3m30b2, d3m30c_, d3m30d1, d3m30e1, d3m30e2, d3m30f_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn

Domain d3m30d2: 3m30 D:270-549 [199806]
Other proteins in same PDB: d3m30a1, d3m30b1, d3m30b2, d3m30c_, d3m30d1, d3m30e1, d3m30e2, d3m30f_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn

Domains for 3m32:

Domain d3m32a2: 3m32 A:270-549 [199810]
Other proteins in same PDB: d3m32a1, d3m32b1, d3m32b2, d3m32c_, d3m32d1, d3m32e1, d3m32e2, d3m32f_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, sht, tp7, zn

Domain d3m32d2: 3m32 D:270-549 [199814]
Other proteins in same PDB: d3m32a1, d3m32b1, d3m32b2, d3m32c_, d3m32d1, d3m32e1, d3m32e2, d3m32f_
automated match to d1hbna1
complexed with act, com, edo, f43, mg, peg, sht, tp7, zn

Methanopyrus kandleri [TaxId:2320] [48085] (1 PDB entry)
- Domains for 1e6v:
  1. Domain d1e6va1: 1e6v A:273-552 [18527]
    Other proteins in same PDB: d1e6va2, d1e6vb1, d1e6vb2, d1e6vc_, d1e6vd2, d1e6ve1, d1e6ve2, d1e6vf_
    complexed with com, f43, tp7
  2. Domain d1e6vd1: 1e6v D:273-552 [18528]
    Other proteins in same PDB: d1e6va2, d1e6vb1, d1e6vb2, d1e6vc_, d1e6vd2, d1e6ve1, d1e6ve2, d1e6vf_
    complexed with com, f43, tp7
Methanosarcina barkeri [TaxId:2208] [48086] (1 PDB entry)
- Domains for 1e6y:
  1. Domain d1e6ya1: 1e6y A:1284-1569 [18529]
    Other proteins in same PDB: d1e6ya2, d1e6yb1, d1e6yb2, d1e6yc_, d1e6yd2, d1e6ye1, d1e6ye2, d1e6yf_
    complexed with com, f43, gol, tp7
  2. Domain d1e6yd1: 1e6y D:4284-4569 [18530]
    Other proteins in same PDB: d1e6ya2, d1e6yb1, d1e6yb2, d1e6yc_, d1e6yd2, d1e6ye1, d1e6ye2, d1e6yf_
    complexed with com, f43, gol, tp7

More info for Protein Alpha chain from a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain

Timeline for Protein Alpha chain from a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain:

Protein Alpha chain from a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Alpha chain from a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain appears in SCOPe 2.02
Protein Alpha chain from a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain appears in SCOPe 2.04
Protein Alpha chain from a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain appears in the current release, SCOPe 2.08