SCOPe 2.03: Species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Lineage for Species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Root: SCOPe 2.03
Class a: All alpha proteins [46456] (284 folds)
Fold a.22: Histone-fold [47112] (1 superfamily)
core: 3 helices; long middle helix is flanked at each end with shorter ones
Superfamily a.22.1: Histone-fold [47113] (5 families)
Family a.22.1.1: Nucleosome core histones [47114] (6 proteins)
form octamers composed of two copies of each of the four histones
Protein Histone H4 [47125] (7 species)
Species African clawed frog (Xenopus laevis) [TaxId:8355] [47127] (38 PDB entries)

PDB entries in Species: African clawed frog (Xenopus laevis) [TaxId: 8355]:

Domain(s) for 1aoi:
1. Domain d1aoib_: 1aoi B: [16470]
  Other proteins in same PDB: d1aoia_, d1aoic_, d1aoid_, d1aoie_, d1aoig_, d1aoih_
  protein/DNA complex; complexed with mn
2. Domain d1aoif_: 1aoi F: [16471]
  Other proteins in same PDB: d1aoia_, d1aoic_, d1aoid_, d1aoie_, d1aoig_, d1aoih_
  protein/DNA complex; complexed with mn
Domain(s) for 1kx3:
1. Domain d1kx3b_: 1kx3 B: [77578]
  Other proteins in same PDB: d1kx3a_, d1kx3c_, d1kx3d_, d1kx3e_, d1kx3g_, d1kx3h_
  protein/DNA complex; complexed with mn
2. Domain d1kx3f_: 1kx3 F: [77582]
  Other proteins in same PDB: d1kx3a_, d1kx3c_, d1kx3d_, d1kx3e_, d1kx3g_, d1kx3h_
  protein/DNA complex; complexed with mn
Domain(s) for 1kx4:
1. Domain d1kx4b_: 1kx4 B: [77586]
  Other proteins in same PDB: d1kx4a_, d1kx4c_, d1kx4d_, d1kx4e_, d1kx4g_, d1kx4h_
  protein/DNA complex; complexed with cl, mn
2. Domain d1kx4f_: 1kx4 F: [77590]
  Other proteins in same PDB: d1kx4a_, d1kx4c_, d1kx4d_, d1kx4e_, d1kx4g_, d1kx4h_
  protein/DNA complex; complexed with cl, mn
Domain(s) for 1kx5:
1. Domain d1kx5b_: 1kx5 B: [77594]
  Other proteins in same PDB: d1kx5a_, d1kx5c_, d1kx5d_, d1kx5e_, d1kx5g_, d1kx5h_
  protein/DNA complex; complexed with cl, mn
2. Domain d1kx5f_: 1kx5 F: [77598]
  Other proteins in same PDB: d1kx5a_, d1kx5c_, d1kx5d_, d1kx5e_, d1kx5g_, d1kx5h_
  protein/DNA complex; complexed with cl, mn
Domain(s) for 1m18:
1. Domain d1m18b_: 1m18 B: [78372]
  Other proteins in same PDB: d1m18a_, d1m18c_, d1m18d_, d1m18e_, d1m18g_, d1m18h_
  protein/DNA complex; complexed with 1sz, mn
2. Domain d1m18f_: 1m18 F: [78376]
  Other proteins in same PDB: d1m18a_, d1m18c_, d1m18d_, d1m18e_, d1m18g_, d1m18h_
  protein/DNA complex; complexed with 1sz, mn
Domain(s) for 1m19:
1. Domain d1m19b_: 1m19 B: [78380]
  Other proteins in same PDB: d1m19a_, d1m19c_, d1m19d_, d1m19e_, d1m19g_, d1m19h_
  protein/DNA complex; complexed with imt, mn
2. Domain d1m19f_: 1m19 F: [78384]
  Other proteins in same PDB: d1m19a_, d1m19c_, d1m19d_, d1m19e_, d1m19g_, d1m19h_
  protein/DNA complex; complexed with imt, mn
Domain(s) for 1m1a:
1. Domain d1m1ab_: 1m1a B: [78388]
  Other proteins in same PDB: d1m1aa_, d1m1ac_, d1m1ad_, d1m1ae_, d1m1ag_, d1m1ah_
  protein/DNA complex; complexed with imt, mn
2. Domain d1m1af_: 1m1a F: [78392]
  Other proteins in same PDB: d1m1aa_, d1m1ac_, d1m1ad_, d1m1ae_, d1m1ag_, d1m1ah_
  protein/DNA complex; complexed with imt, mn
Domain(s) for 1p34:
1. Domain d1p34b_: 1p34 B: [93971]
  Other proteins in same PDB: d1p34a_, d1p34c_, d1p34d_, d1p34e_, d1p34g_, d1p34h_
  protein/DNA complex; mutant
2. Domain d1p34f_: 1p34 F: [93975]
  Other proteins in same PDB: d1p34a_, d1p34c_, d1p34d_, d1p34e_, d1p34g_, d1p34h_
  protein/DNA complex; mutant
Domain(s) for 1p3a:
1. Domain d1p3ab_: 1p3a B: [93981]
  Other proteins in same PDB: d1p3aa_, d1p3ac_, d1p3ad_, d1p3ae_, d1p3ag_, d1p3ah_
  protein/DNA complex; mutant
2. Domain d1p3af_: 1p3a F: [93985]
  Other proteins in same PDB: d1p3aa_, d1p3ac_, d1p3ad_, d1p3ae_, d1p3ag_, d1p3ah_
  protein/DNA complex; mutant
Domain(s) for 1p3b:
1. Domain d1p3bb_: 1p3b B: [93989]
  Other proteins in same PDB: d1p3ba_, d1p3bc_, d1p3bd_, d1p3be_, d1p3bg_, d1p3bh_
  protein/DNA complex; mutant
2. Domain d1p3bf_: 1p3b F: [93993]
  Other proteins in same PDB: d1p3ba_, d1p3bc_, d1p3bd_, d1p3be_, d1p3bg_, d1p3bh_
  protein/DNA complex; mutant
Domain(s) for 1p3f:
1. Domain d1p3fb_: 1p3f B: [93999]
  Other proteins in same PDB: d1p3fa_, d1p3fc_, d1p3fd_, d1p3fe_, d1p3fg_, d1p3fh_
  protein/DNA complex; mutant
2. Domain d1p3ff_: 1p3f F: [94003]
  Other proteins in same PDB: d1p3fa_, d1p3fc_, d1p3fd_, d1p3fe_, d1p3fg_, d1p3fh_
  protein/DNA complex; mutant
Domain(s) for 1p3g:
1. Domain d1p3gb_: 1p3g B: [94007]
  Other proteins in same PDB: d1p3ga_, d1p3gc_, d1p3gd_, d1p3ge_, d1p3gg_, d1p3gh_
  protein/DNA complex; mutant
2. Domain d1p3gf_: 1p3g F: [94011]
  Other proteins in same PDB: d1p3ga_, d1p3gc_, d1p3gd_, d1p3ge_, d1p3gg_, d1p3gh_
  protein/DNA complex; mutant
Domain(s) for 1p3i:
1. Domain d1p3ib_: 1p3i B: [94015]
  Other proteins in same PDB: d1p3ia_, d1p3ic_, d1p3id_, d1p3ie_, d1p3ig_, d1p3ih_
  protein/DNA complex; mutant
2. Domain d1p3if_: 1p3i F: [94019]
  Other proteins in same PDB: d1p3ia_, d1p3ic_, d1p3id_, d1p3ie_, d1p3ig_, d1p3ih_
  protein/DNA complex; mutant
Domain(s) for 1p3k:
1. Domain d1p3kb_: 1p3k B: [94025]
  Other proteins in same PDB: d1p3ka_, d1p3kc_, d1p3kd_, d1p3ke_, d1p3kg_, d1p3kh_
  protein/DNA complex; mutant
2. Domain d1p3kf_: 1p3k F: [94029]
  Other proteins in same PDB: d1p3ka_, d1p3kc_, d1p3kd_, d1p3ke_, d1p3kg_, d1p3kh_
  protein/DNA complex; mutant
Domain(s) for 1p3l:
1. Domain d1p3lb_: 1p3l B: [94033]
  Other proteins in same PDB: d1p3la_, d1p3lc_, d1p3ld_, d1p3le_, d1p3lg_, d1p3lh_
  protein/DNA complex; mutant
2. Domain d1p3lf_: 1p3l F: [94037]
  Other proteins in same PDB: d1p3la_, d1p3lc_, d1p3ld_, d1p3le_, d1p3lg_, d1p3lh_
  protein/DNA complex; mutant
Domain(s) for 1p3m:
1. Domain d1p3mb_: 1p3m B: [94041]
  Other proteins in same PDB: d1p3ma_, d1p3mc_, d1p3md_, d1p3me_, d1p3mg_, d1p3mh_
  protein/DNA complex; mutant
2. Domain d1p3mf_: 1p3m F: [94045]
  Other proteins in same PDB: d1p3ma_, d1p3mc_, d1p3md_, d1p3me_, d1p3mg_, d1p3mh_
  protein/DNA complex; mutant
Domain(s) for 1p3o:
1. Domain d1p3ob_: 1p3o B: [94050]
  Other proteins in same PDB: d1p3oa_, d1p3oc_, d1p3od_, d1p3oe_, d1p3og_, d1p3oh_
  protein/DNA complex; mutant
2. Domain d1p3of_: 1p3o F: [94054]
  Other proteins in same PDB: d1p3oa_, d1p3oc_, d1p3od_, d1p3oe_, d1p3og_, d1p3oh_
  protein/DNA complex; mutant
Domain(s) for 1p3p:
1. Domain d1p3pb_: 1p3p B: [94058]
  Other proteins in same PDB: d1p3pa_, d1p3pc_, d1p3pd_, d1p3pe_, d1p3pg_, d1p3ph_
  protein/DNA complex; mutant
2. Domain d1p3pf_: 1p3p F: [94062]
  Other proteins in same PDB: d1p3pa_, d1p3pc_, d1p3pd_, d1p3pe_, d1p3pg_, d1p3ph_
  protein/DNA complex; mutant
Domain(s) for 1s32:
1. Domain d1s32b_: 1s32 B: [98413]
  Other proteins in same PDB: d1s32a_, d1s32c_, d1s32d_, d1s32e_, d1s32g_, d1s32h_
  protein/DNA complex; complexed with cl, imt, mn, ogg
2. Domain d1s32f_: 1s32 F: [98417]
  Other proteins in same PDB: d1s32a_, d1s32c_, d1s32d_, d1s32e_, d1s32g_, d1s32h_
  protein/DNA complex; complexed with cl, imt, mn, ogg
Domain(s) for 1zbb:
1. Domain d1zbbb1: 1zbb B:24-102 [145986]
  Other proteins in same PDB: d1zbba1, d1zbbd1, d1zbbe1
  automatically matched to d1p3ob_
  protein/DNA complex
2. Domain d1zbbf1: 1zbb F:24-102 [145989]
  Other proteins in same PDB: d1zbba1, d1zbbd1, d1zbbe1
  automatically matched to d1p3ob_
  protein/DNA complex
Domain(s) for 1zla:
1. Domain d1zlab_: 1zla B: [125241]
  Other proteins in same PDB: d1zlaa_, d1zlac1, d1zlad_, d1zlae_, d1zlag_, d1zlah_
  automated match to d1kx5b_
  protein/DNA complex
2. Domain d1zlaf_: 1zla F: [125245]
  Other proteins in same PDB: d1zlaa_, d1zlac1, d1zlad_, d1zlae_, d1zlag_, d1zlah_
  automated match to d1kx5b_
  protein/DNA complex
Domain(s) for 2f8n:
1. Domain d2f8nb_: 2f8n B: [133134]
  Other proteins in same PDB: d2f8na_, d2f8nd_, d2f8ne_, d2f8ng_, d2f8nh_, d2f8nk1
  automated match to d1kx5b_
  protein/DNA complex
2. Domain d2f8nf_: 2f8n F: [133137]
  Other proteins in same PDB: d2f8na_, d2f8nd_, d2f8ne_, d2f8ng_, d2f8nh_, d2f8nk1
  automated match to d1kx5b_
  protein/DNA complex
Domain(s) for 2fj7:
1. Domain d2fj7b1: 2fj7 B:24-102 [133549]
  Other proteins in same PDB: d2fj7a1, d2fj7d1, d2fj7e1, d2fj7h1
  automatically matched to d1p3ob_
  protein/DNA complex
2. Domain d2fj7f1: 2fj7 F:24-102 [133552]
  Other proteins in same PDB: d2fj7a1, d2fj7d1, d2fj7e1, d2fj7h1
  automatically matched to d1p3ob_
  protein/DNA complex
Domain(s) for 2hue:
- Domain d2huec_: 2hue C: [136776]
  Other proteins in same PDB: d2huea1, d2hueb_
  automated match to d1aoif_
  complexed with gol, so4, zn
Domain(s) for 2io5:
- Domain d2io5c_: 2io5 C: [137542]
  Other proteins in same PDB: d2io5a1, d2io5b_
  automated match to d1kx5b_
Domain(s) for 2nzd:
1. Domain d2nzdb_: 2nzd B: [138849]
  Other proteins in same PDB: d2nzda_, d2nzdc_, d2nzdd_, d2nzde_, d2nzdg_, d2nzdh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with mn
2. Domain d2nzdf_: 2nzd F: [138852]
  Other proteins in same PDB: d2nzda_, d2nzdc_, d2nzdd_, d2nzde_, d2nzdg_, d2nzdh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with mn
Domain(s) for 3b6f:
1. Domain d3b6fb1: 3b6f B:24-102 [154885]
  Other proteins in same PDB: d3b6fa1, d3b6fc1, d3b6fd1, d3b6fe1, d3b6fg1, d3b6fh1
  automatically matched to d1p3ob_
  protein/DNA complex; complexed with mn
2. Domain d3b6ff1: 3b6f F:24-102 [154889]
  Other proteins in same PDB: d3b6fa1, d3b6fc1, d3b6fd1, d3b6fe1, d3b6fg1, d3b6fh1
  automatically matched to d1p3ob_
  protein/DNA complex; complexed with mn
Domain(s) for 3b6g:
1. Domain d3b6gb1: 3b6g B:24-102 [154893]
  Other proteins in same PDB: d3b6ga1, d3b6gc1, d3b6gd1, d3b6ge1, d3b6gg1, d3b6gh1
  automatically matched to d1p3ob_
  protein/DNA complex; complexed with mn
2. Domain d3b6gf1: 3b6g F:24-102 [154897]
  Other proteins in same PDB: d3b6ga1, d3b6gc1, d3b6gd1, d3b6ge1, d3b6gg1, d3b6gh1
  automatically matched to d1p3ob_
  protein/DNA complex; complexed with mn
Domain(s) for 3c1b:
1. Domain d3c1bb_: 3c1b B: [155852]
  Other proteins in same PDB: d3c1ba_, d3c1bc_, d3c1bd_, d3c1be_, d3c1bg_, d3c1bh_
  automated match to d1eqzd_
  protein/DNA complex
2. Domain d3c1bf_: 3c1b F: [155856]
  Other proteins in same PDB: d3c1ba_, d3c1bc_, d3c1bd_, d3c1be_, d3c1bg_, d3c1bh_
  automated match to d1eqzd_
  protein/DNA complex
Domain(s) for 3c1c:
1. Domain d3c1cb1: 3c1c B:25-102 [155859]
  Other proteins in same PDB: d3c1cc1, d3c1cd1, d3c1cg1, d3c1ch1
  automatically matched to d1p3ob_
  protein/DNA complex
2. Domain d3c1cf1: 3c1c F:224-302 [155862]
  Other proteins in same PDB: d3c1cc1, d3c1cd1, d3c1cg1, d3c1ch1
  automatically matched to d1p3ob_
  protein/DNA complex
Domain(s) for 3kuy:
1. Domain d3kuyb_: 3kuy B: [191749]
  Other proteins in same PDB: d3kuya_, d3kuyc_, d3kuyd_, d3kuye_, d3kuyg_, d3kuyh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with atv, mn
2. Domain d3kuyf_: 3kuy F: [191751]
  Other proteins in same PDB: d3kuya_, d3kuyc_, d3kuyd_, d3kuye_, d3kuyg_, d3kuyh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with atv, mn

Domain(s) for 3lel:

Domain d3lelb_: 3lel B: [191754]
Other proteins in same PDB: d3lela_, d3lelc_, d3leld_, d3lele_, d3lelg_, d3lelh_, d3lelk_, d3lelm_, d3leln_, d3lelo_, d3lelq_, d3lelr_
automated match to d1kx5b_
protein/DNA complex; complexed with mn

Domain d3lelf_: 3lel F: [191757]
Other proteins in same PDB: d3lela_, d3lelc_, d3leld_, d3lele_, d3lelg_, d3lelh_, d3lelk_, d3lelm_, d3leln_, d3lelo_, d3lelq_, d3lelr_
automated match to d1kx5b_
protein/DNA complex; complexed with mn

Domain d3lell_: 3lel L: [191760]
Other proteins in same PDB: d3lela_, d3lelc_, d3leld_, d3lele_, d3lelg_, d3lelh_, d3lelk_, d3lelm_, d3leln_, d3lelo_, d3lelq_, d3lelr_
automated match to d1kx5b_
protein/DNA complex; complexed with mn

Domain d3lelp_: 3lel P: [191763]
Other proteins in same PDB: d3lela_, d3lelc_, d3leld_, d3lele_, d3lelg_, d3lelh_, d3lelk_, d3lelm_, d3leln_, d3lelo_, d3lelq_, d3lelr_
automated match to d1kx5b_
protein/DNA complex; complexed with mn

Domain(s) for 3lja:
1. Domain d3ljab_: 3lja B: [191766]
  Other proteins in same PDB: d3ljaa_, d3ljad_, d3ljae_, d3ljah_
  automated match to d1kx5b_
  protein/DNA complex; complexed with mn, so4
2. Domain d3ljaf_: 3lja F: [191768]
  Other proteins in same PDB: d3ljaa_, d3ljad_, d3ljae_, d3ljah_
  automated match to d1kx5b_
  protein/DNA complex; complexed with mn, so4
Domain(s) for 3mgp:
1. Domain d3mgpb_: 3mgp B: [191773]
  Other proteins in same PDB: d3mgpa_, d3mgpc_, d3mgpd_, d3mgpe_, d3mgpg_, d3mgph_
  automated match to d1kx5b_
  protein/DNA complex; complexed with cl, co
2. Domain d3mgpf_: 3mgp F: [191775]
  Other proteins in same PDB: d3mgpa_, d3mgpc_, d3mgpd_, d3mgpe_, d3mgpg_, d3mgph_
  automated match to d1kx5b_
  protein/DNA complex; complexed with cl, co
Domain(s) for 3mgq:
1. Domain d3mgqb_: 3mgq B: [191777]
  Other proteins in same PDB: d3mgqa_, d3mgqc_, d3mgqd_, d3mgqe_, d3mgqg_, d3mgqh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with cl, ni
2. Domain d3mgqf_: 3mgq F: [191779]
  Other proteins in same PDB: d3mgqa_, d3mgqc_, d3mgqd_, d3mgqe_, d3mgqg_, d3mgqh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with cl, ni
Domain(s) for 3mgr:
1. Domain d3mgrb_: 3mgr B: [191781]
  Other proteins in same PDB: d3mgra_, d3mgrc_, d3mgrd_, d3mgre_, d3mgrg_, d3mgrh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with cl, mn, rb
2. Domain d3mgrf_: 3mgr F: [191783]
  Other proteins in same PDB: d3mgra_, d3mgrc_, d3mgrd_, d3mgre_, d3mgrg_, d3mgrh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with cl, mn, rb
Domain(s) for 3mnn:
1. Domain d3mnnb_: 3mnn B: [191785]
  Other proteins in same PDB: d3mnna_, d3mnnc_, d3mnnd_, d3mnne_, d3mnng_, d3mnnh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with mg, mml, ptw, ru, so4
2. Domain d3mnnf_: 3mnn F: [191787]
  Other proteins in same PDB: d3mnna_, d3mnnc_, d3mnnd_, d3mnne_, d3mnng_, d3mnnh_
  automated match to d1kx5b_
  protein/DNA complex; complexed with mg, mml, ptw, ru, so4
Domain(s) for 3mvd:
1. Domain d3mvdb_: 3mvd B: [191789]
  Other proteins in same PDB: d3mvda_, d3mvdc_, d3mvdd_, d3mvde_, d3mvdg_, d3mvdh_
  automated match to d1kx5b_
  protein/DNA complex
2. Domain d3mvdf_: 3mvd F: [191791]
  Other proteins in same PDB: d3mvda_, d3mvdc_, d3mvdd_, d3mvde_, d3mvdg_, d3mvdh_
  automated match to d1kx5b_
  protein/DNA complex

More info for Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H4

Timeline for Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H4:

Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H4 first appeared (with stable ids) in SCOP 1.55
Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H4 appears in SCOPe 2.02
Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H4 appears in SCOPe 2.04
Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H4 appears in the current release, SCOPe 2.08