SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families)
contains a small beta-sheet (wing)
Family a.4.5.19: Z-DNA binding domain [46853] (5 proteins)
Pfam PF02295
Protein automated matches [190680] (2 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [225893] (3 PDB entries)
1. Domain for 2l54:
  - Domain d2l54a_: 2l54 A: [242774]
    automated match to d1qbjc_
    mutant
2. Domains for 3irq:
  1. Domain d3irqa1: 3irq A:140-197 [211851]
    Other proteins in same PDB: d3irqa2, d3irqb2, d3irqc2, d3irqd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex
  2. Domain d3irqb1: 3irq B:140-198 [211852]
    Other proteins in same PDB: d3irqa2, d3irqb2, d3irqc2, d3irqd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex
  3. Domain d3irqc1: 3irq C:140-199 [211853]
    Other proteins in same PDB: d3irqa2, d3irqb2, d3irqc2, d3irqd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex
  4. Domain d3irqd1: 3irq D:140-199 [211854]
    Other proteins in same PDB: d3irqa2, d3irqb2, d3irqc2, d3irqd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex
3. Domains for 3irr:
  1. Domain d3irra1: 3irr A:140-198 [211855]
    Other proteins in same PDB: d3irra2, d3irrb2, d3irrc2, d3irrd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex; complexed with epe
  2. Domain d3irrb1: 3irr B:140-198 [211856]
    Other proteins in same PDB: d3irra2, d3irrb2, d3irrc2, d3irrd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex; complexed with epe
  3. Domain d3irrc1: 3irr C:140-198 [211857]
    Other proteins in same PDB: d3irra2, d3irrb2, d3irrc2, d3irrd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex; complexed with epe
  4. Domain d3irrd1: 3irr D:140-199 [211858]
    Other proteins in same PDB: d3irra2, d3irrb2, d3irrc2, d3irrd2
    automated match to d1qbjc_
    protein/DNA complex; protein/RNA complex; complexed with epe
Mouse (Mus musculus) [TaxId:10090] [187801] (1 PDB entry)
- Domains for 2heo:
  1. Domain d2heoa_: 2heo A: [165075]
    automated match to d1j75a_
    protein/DNA complex
  2. Domain d2heod_: 2heo D: [165076]
    automated match to d1j75a_
    protein/DNA complex

More info for Protein automated matches from a.4.5.19: Z-DNA binding domain

Timeline for Protein automated matches from a.4.5.19: Z-DNA binding domain:

Protein automated matches from a.4.5.19: Z-DNA binding domain first appeared in SCOPe 2.01
Protein automated matches from a.4.5.19: Z-DNA binding domain appears in SCOPe 2.07