Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1181243Fold c.72: Ribokinase-like [53612] (3 superfamilies)
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. 1181244Superfamily c.72.1: Ribokinase-like [53613] (6 families) (S)
    has extra strand located between strands 2 and 3
  5. 1181435Family c.72.1.0: automated matches [191321] (1 protein)
    not a true family
  6. 1181436Protein automated matches [190117] (18 species)
    not a true protein

Species:

  1. 1181437Anopheles gambiae [TaxId:7165] [196378] (1 PDB entry)
  2. 1181439Bacillus halodurans [TaxId:272558] [194493] (1 PDB entry)
  3. 1181441Burkholderia thailandensis [TaxId:271848] [196112] (1 PDB entry)
  4. 1181444Corynebacterium glutamicum [TaxId:1718] [189540] (1 PDB entry)
  5. 1181449Enterococcus faecalis [TaxId:1351] [186955] (1 PDB entry)
  6. 1181451Enterococcus faecalis [TaxId:226185] [187075] (1 PDB entry)
  7. 1181454Escherichia coli K-12 [TaxId:83333] [189558] (3 PDB entries)
    1. Domains for 3n1c:
      1. 1181455Domain d3n1ca_: 3n1c A: [181774]
        automated match to d2abqa1
        complexed with f6p
      2. 1181456Domain d3n1cb_: 3n1c B: [181775]
        automated match to d2abqa1
        complexed with f6p
      3. 1181457Domain d3n1cc_: 3n1c C: [181776]
        automated match to d2abqa1
        complexed with f6p
      4. 1181458Domain d3n1cd_: 3n1c D: [181777]
        automated match to d2abqa1
        complexed with f6p
    2. Domain for 3uqd:
    3. Domains for 3uqe:
      1. 1181460Domain d3uqea_: 3uqe A: [194282]
        automated match to d3n1ca_
        complexed with atp, mg, pop; mutant
      2. 1181461Domain d3uqeb_: 3uqe B: [194284]
        automated match to d3n1ca_
        complexed with atp, mg, pop; mutant
  8. 1181462Escherichia coli [TaxId:217992] [189024] (2 PDB entries)
    1. Domains for 3iq0:
      1. 1181463Domain d3iq0a_: 3iq0 A: [178517]
        automated match to d1wyea1
        complexed with atp, mg
      2. 1181464Domain d3iq0b_: 3iq0 B: [178518]
        automated match to d1wyea1
        complexed with atp, mg
    2. Domains for 3k9e:
      1. 1181465Domain d3k9ea_: 3k9e A: [179209]
        automated match to d1wyea1
      2. 1181466Domain d3k9eb_: 3k9e B: [179210]
        automated match to d1wyea1
  9. 1181467Escherichia coli [TaxId:562] [188596] (1 PDB entry)
  10. 1181470Escherichia coli [TaxId:83333] [196542] (1 PDB entry)
  11. 1181472Listeria innocua [TaxId:1642] [196383] (2 PDB entries)
    1. Domain for 3jul:
    2. Domain for 3q1y:
  12. 1181475Methanococcus jannaschii [TaxId:2190] [187510] (2 PDB entries)
    1. Domains for 2c49:
      1. 1181477Domain d2c49a_: 2c49 A: [163256]
        automated match to d1vm7b_
        complexed with adn, anp, mg
      2. 1181478Domain d2c49b_: 2c49 B: [163257]
        automated match to d1vm7b_
        complexed with adn, anp, mg
    2. Domain for 2c4e:
  13. 1181479Mycobacterium tuberculosis [TaxId:1773] [193352] (1 PDB entry)
  14. 1181481Staphylococcus aureus [TaxId:1280] [187913] (1 PDB entry)
  15. 1181484Staphylococcus aureus [TaxId:93062] [195529] (1 PDB entry)
  16. 1181486Sulfolobus tokodaii [TaxId:273063] [186841] (2 PDB entries)
    1. Domains for 1wye:
      1. 1181498Domain d1wyea_: 1wye A: [121438]
        automated match to d1v19a_
      2. 1181499Domain d1wyeb_: 1wye B: [121439]
        automated match to d1v19a_
      3. 1181500Domain d1wyec_: 1wye C: [121440]
        automated match to d1v19a_
      4. 1181501Domain d1wyed_: 1wye D: [121441]
        automated match to d1v19a_
      5. 1181502Domain d1wyee_: 1wye E: [121442]
        automated match to d1v19a_
      6. 1181503Domain d1wyef_: 1wye F: [121443]
        automated match to d1v19a_
    2. Domains for 2dcn:
      1. 1181487Domain d2dcnb_: 2dcn B: [131375]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      2. 1181488Domain d2dcnc_: 2dcn C: [131376]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      3. 1181489Domain d2dcnd_: 2dcn D: [131377]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      4. 1181490Domain d2dcne_: 2dcn E: [131378]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      5. 1181491Domain d2dcnf_: 2dcn F: [131379]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      6. 1181492Domain d2dcng_: 2dcn G: [131380]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      7. 1181493Domain d2dcnh_: 2dcn H: [131381]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      8. 1181494Domain d2dcni_: 2dcn I: [131382]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      9. 1181495Domain d2dcnj_: 2dcn J: [131383]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      10. 1181496Domain d2dcnk_: 2dcn K: [131384]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
      11. 1181497Domain d2dcnl_: 2dcn L: [131385]
        Other proteins in same PDB: d2dcna1
        automated match to d1v19a_
        complexed with adp, ckp, k, mg
  17. 1181504Trypanosoma brucei [TaxId:185431] [195074] (1 PDB entry)
  18. 1181506Xylella fastidiosa [TaxId:183190] [189265] (2 PDB entries)
    1. Domains for 3ljs:
      1. 1181507Domain d3ljsa_: 3ljs A: [180328]
        automated match to d1tyyb_
        complexed with po4
      2. 1181508Domain d3ljsb_: 3ljs B: [180329]
        automated match to d1tyyb_
        complexed with po4
    2. Domains for 3lki:
      1. 1181509Domain d3lkia_: 3lki A: [180344]
        automated match to d1tyyb_
        complexed with atp, k, po4
      2. 1181510Domain d3lkib_: 3lki B: [180345]
        automated match to d1tyyb_
        complexed with atp, k, po4

More info for Protein automated matches from c.72.1.0: automated matches

Timeline for Protein automated matches from c.72.1.0: automated matches: