Lineage for Protein: Viral RNA polymerase

  1. Root: SCOPe 2.01
  2. 1054197Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 1055706Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 1055707Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 1056177Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)
  6. 1056185Protein Viral RNA polymerase [56695] (14 species)

Species:

  1. 1056186Avian infectious bursal disease virus [TaxId:10995] [160955] (1 PDB entry)
    Uniprot Q9Q6Q5 31-804
  2. 1056188Bovine viral diarrhea virus [TaxId:11099] [103401] (3 PDB entries)
    1. Domain for 1s48:
    2. Domain for 1s49:
    3. Domains for 1s4f:
      1. 1056191Domain d1s4fa_: 1s4f A: [98495]
      2. 1056192Domain d1s4fb_: 1s4f B: [98496]
      3. 1056193Domain d1s4fc_: 1s4f C: [98497]
      4. 1056194Domain d1s4fd_: 1s4f D: [98498]
  3. 1056195Foot-and-mouth disease virus - type c [TaxId:12116] [187085] (1 PDB entry)
  4. 1056197Foot-and-mouth disease virus [TaxId:12110] [111302] (14 PDB entries)
    Uniprot Q9QCE4 1858-2327
    1. Domain for 1u09:
    2. Domain for 1wne:
      • 1056211Domain d1wnea_: 1wne A: [109434]
        protein/DNA complex; protein/RNA complex; complexed with mg
    3. Domain for 2d7s:
    4. Domain for 2e9r:
    5. Domains for 2e9t:
      1. 1056204Domain d2e9ta_: 2e9t A: [146733]
        automated match to d1u09a_
        protein/RNA complex; complexed with mg, ppv
      2. 1056205Domain d2e9td_: 2e9t D: [146734]
        automated match to d1u09a_
        protein/RNA complex; complexed with mg, ppv
    6. Domain for 2e9z:
    7. Domains for 2ec0:
      1. 1056208Domain d2ec0a_: 2ec0 A: [146776]
        automated match to d1u09a_
        protein/RNA complex; complexed with mg, ppv
      2. 1056209Domain d2ec0d_: 2ec0 D: [146777]
        automated match to d1u09a_
        protein/RNA complex; complexed with mg, ppv
    8. Domain for 3klv:
    9. Domain for 3kmq:
    10. Domain for 3kms:
    11. Domain for 3kna:
    12. Domain for 3koa:
    13. Domain for 3nky:
    14. Domain for 3nma:
  5. 1056214Hepatitis c virus isolate [TaxId:420174] [188905] (3 PDB entries)
    1. Domains for 3gnv:
      1. 1056217Domain d3gnva_: 3gnv A: [176783]
        automated match to d1nb4a_
        protein/RNA complex; complexed with gol, xnz
      2. 1056218Domain d3gnvb_: 3gnv B: [176784]
        automated match to d1nb4a_
        protein/RNA complex; complexed with gol, xnz
    2. Domains for 3gnw:
      1. 1056215Domain d3gnwa_: 3gnw A: [176785]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cl, xnc
      2. 1056216Domain d3gnwb_: 3gnw B: [176786]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cl, xnc
    3. Domains for 3gol:
      1. 1056219Domain d3gola_: 3gol A: [176789]
        automated match to d1nb4a_
        complexed with mg, xnd
      2. 1056220Domain d3golb_: 3gol B: [176790]
        automated match to d1nb4a_
        complexed with mg, xnd
  6. 1056221Hepatitis c virus subtype 1a [TaxId:31646] [189928] (2 PDB entries)
    1. Domain for 3qgh:
    2. Domain for 3qgi:
  7. 1056224Hepatitis C virus [TaxId:11103] [56697] (41 PDB entries)
    1. Domains for 1c2p:
      1. 1056259Domain d1c2pa_: 1c2p A: [43117]
      2. 1056260Domain d1c2pb_: 1c2p B: [43118]
    2. Domains for 1csj:
      1. 1056296Domain d1csja_: 1csj A: [43120]
      2. 1056297Domain d1csjb_: 1csj B: [43121]
    3. Domain for 1gx5:
    4. Domain for 1gx6:
    5. Domains for 1nb4:
      1. 1056271Domain d1nb4a_: 1nb4 A: [85509]
      2. 1056272Domain d1nb4b_: 1nb4 B: [85510]
    6. Domains for 1nb6:
      1. 1056283Domain d1nb6a_: 1nb6 A: [85511]
        protein/RNA complex; complexed with mn, utp
      2. 1056284Domain d1nb6b_: 1nb6 B: [85512]
        protein/RNA complex; complexed with mn, utp
    7. Domains for 1nb7:
      1. 1056300Domain d1nb7a_: 1nb7 A: [85513]
        protein/RNA complex; complexed with mn
      2. 1056301Domain d1nb7b_: 1nb7 B: [85514]
        protein/RNA complex; complexed with mn
    8. Domains for 1nhu:
      1. 1056267Domain d1nhua_: 1nhu A: [85723]
        protein/RNA complex; complexed with 153
      2. 1056268Domain d1nhub_: 1nhu B: [85724]
        protein/RNA complex; complexed with 153
    9. Domains for 1nhv:
      1. 1056298Domain d1nhva_: 1nhv A: [85725]
        protein/RNA complex; complexed with 154
      2. 1056299Domain d1nhvb_: 1nhv B: [85726]
        protein/RNA complex; complexed with 154
    10. Domain for 1os5:
    11. Domain for 1quv:
    12. Domain for 2brk:
    13. Domains for 2fvc:
      1. 1056261Domain d2fvca_: 2fvc A: [164476]
        automated match to d1nb4a_
        complexed with 888
      2. 1056262Domain d2fvcb_: 2fvc B: [164477]
        automated match to d1nb4a_
        complexed with 888
    14. Domains for 2giq:
      1. 1056230Domain d2giqa_: 2giq A: [164724]
        automated match to d1nb4a_
        complexed with nn2
      2. 1056231Domain d2giqb_: 2giq B: [164725]
        automated match to d1nb4a_
        complexed with nn2
    15. Domains for 2gir:
      1. 1056245Domain d2gira_: 2gir A: [164726]
        automated match to d1nb4a_
        complexed with nn3
      2. 1056246Domain d2girb_: 2gir B: [164727]
        automated match to d1nb4a_
        complexed with nn3
    16. Domain for 2hai:
    17. Domains for 2qe2:
      1. 1056302Domain d2qe2a_: 2qe2 A: [167555]
        automated match to d1nb4a_
        complexed with 452
      2. 1056303Domain d2qe2b_: 2qe2 B: [167556]
        automated match to d1nb4a_
        complexed with 452
    18. Domains for 2qe5:
      1. 1056289Domain d2qe5a_: 2qe5 A: [167559]
        automated match to d1nb4a_
        complexed with 617
      2. 1056290Domain d2qe5b_: 2qe5 B: [167560]
        automated match to d1nb4a_
        complexed with 617
      3. 1056291Domain d2qe5c_: 2qe5 C: [167561]
        automated match to d1nb4a_
        complexed with 617
      4. 1056292Domain d2qe5d_: 2qe5 D: [167562]
        automated match to d1nb4a_
        complexed with 617
    19. Domains for 2zku:
      1. 1056253Domain d2zkua_: 2zku A: [171292]
        automated match to d1nb4a_
        complexed with acy, gol
      2. 1056254Domain d2zkub_: 2zku B: [171293]
        automated match to d1nb4a_
        complexed with acy, gol
      3. 1056255Domain d2zkuc_: 2zku C: [171294]
        automated match to d1nb4a_
        complexed with acy, gol
      4. 1056256Domain d2zkud_: 2zku D: [171295]
        automated match to d1nb4a_
        complexed with acy, gol
    20. Domains for 3ciz:
      1. 1056240Domain d3ciza_: 3ciz A: [173264]
        automated match to d1nb4a_
        protein/RNA complex; complexed with sx1, zn
      2. 1056241Domain d3cizb_: 3ciz B: [173265]
        automated match to d1nb4a_
        protein/RNA complex; complexed with sx1, zn
    21. Domains for 3cj0:
      1. 1056243Domain d3cj0a_: 3cj0 A: [173266]
        automated match to d1nb4a_
        protein/RNA complex; complexed with sx2
      2. 1056244Domain d3cj0b_: 3cj0 B: [173267]
        automated match to d1nb4a_
        protein/RNA complex; complexed with sx2
    22. Domains for 3cj2:
      1. 1056236Domain d3cj2a_: 3cj2 A: [173268]
        automated match to d1nb4a_
        protein/RNA complex; complexed with ni, sx3
      2. 1056237Domain d3cj2b_: 3cj2 B: [173269]
        automated match to d1nb4a_
        protein/RNA complex; complexed with ni, sx3
    23. Domains for 3cj3:
      1. 1056251Domain d3cj3a_: 3cj3 A: [173270]
        automated match to d1nb4a_
        protein/RNA complex; complexed with ni, sx4
      2. 1056252Domain d3cj3b_: 3cj3 B: [173271]
        automated match to d1nb4a_
        protein/RNA complex; complexed with ni, sx4
    24. Domains for 3cj4:
      1. 1056275Domain d3cj4a_: 3cj4 A: [173272]
        automated match to d1nb4a_
        protein/RNA complex; complexed with ni, sx5
      2. 1056276Domain d3cj4b_: 3cj4 B: [173273]
        automated match to d1nb4a_
        protein/RNA complex; complexed with ni, sx5
    25. Domains for 3cj5:
      1. 1056249Domain d3cj5a_: 3cj5 A: [173274]
        automated match to d1nb4a_
        protein/RNA complex; complexed with sx6
      2. 1056250Domain d3cj5b_: 3cj5 B: [173275]
        automated match to d1nb4a_
        protein/RNA complex; complexed with sx6
    26. Domain for 3frz:
    27. Domains for 3h59:
      1. 1056273Domain d3h59a_: 3h59 A: [177195]
        automated match to d1nb4a_
        complexed with h59
      2. 1056274Domain d3h59b_: 3h59 B: [177196]
        automated match to d1nb4a_
        complexed with h59
    28. Domains for 3h5s:
      1. 1056263Domain d3h5sa_: 3h5s A: [177201]
        automated match to d1nb4a_
        complexed with h5s
      2. 1056264Domain d3h5sb_: 3h5s B: [177202]
        automated match to d1nb4a_
        complexed with h5s
    29. Domains for 3h5u:
      1. 1056257Domain d3h5ua_: 3h5u A: [177203]
        automated match to d1nb4a_
        complexed with h5u
      2. 1056258Domain d3h5ub_: 3h5u B: [177204]
        automated match to d1nb4a_
        complexed with h5u
    30. Domains for 3hky:
      1. 1056238Domain d3hkya_: 3hky A: [177660]
        automated match to d1nb4a_
        complexed with cl, ix6, so4
      2. 1056239Domain d3hkyb_: 3hky B: [177661]
        automated match to d1nb4a_
        complexed with cl, ix6, so4
    31. Domains for 3lkh:
      1. 1056269Domain d3lkha_: 3lkh A: [180342]
        automated match to d1nb4a_
        complexed with lt6
      2. 1056270Domain d3lkhb_: 3lkh B: [180343]
        automated match to d1nb4a_
        complexed with lt6
    32. Domains for 3mf5:
      1. 1056247Domain d3mf5a_: 3mf5 A: [181043]
        automated match to d1c2pb_
        complexed with gol, hjz
      2. 1056248Domain d3mf5b_: 3mf5 B: [181044]
        automated match to d1c2pb_
        complexed with gol, hjz
    33. Domains for 3mwv:
      1. 1056277Domain d3mwva_: 3mwv A: [181653]
        automated match to d1nb4a_
      2. 1056278Domain d3mwvb_: 3mwv B: [181654]
        automated match to d1nb4a_
    34. Domains for 3mww:
      1. 1056294Domain d3mwwa_: 3mww A: [181655]
        automated match to d1nb4a_
        complexed with biw, so4
      2. 1056295Domain d3mwwb_: 3mww B: [181656]
        automated match to d1nb4a_
        complexed with biw, so4
    35. Domains for 3q0z:
      1. 1056281Domain d3q0za_: 3q0z A: [184133]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 23e, so4
      2. 1056282Domain d3q0zb_: 3q0z B: [184134]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 23e, so4
    36. Domains for 3qgd:
      1. 1056287Domain d3qgda_: 3qgd A: [184371]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 23e, 26s, so4
      2. 1056288Domain d3qgdb_: 3qgd B: [184372]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 23e, 26s, so4
    37. Domains for 3qgf:
      1. 1056285Domain d3qgfa_: 3qgf A: [184373]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 23e, 46f, so4
      2. 1056286Domain d3qgfb_: 3qgf B: [184374]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 23e, 46f, so4
    38. Domains for 3tyq:
      1. 1056225Domain d3tyqa_: 3tyq A: [186013]
        automated match to d1nb4a_
        protein/RNA complex; complexed with hi4, po4
      2. 1056226Domain d3tyqb_: 3tyq B: [186014]
        automated match to d1nb4a_
        protein/RNA complex; complexed with hi4, po4
    39. Domains for 3tyv:
      1. 1056227Domain d3tyva_: 3tyv A: [186015]
        automated match to d1nb4a_
        protein/RNA complex; complexed with hi3, po4
      2. 1056228Domain d3tyvb_: 3tyv B: [186016]
        automated match to d1nb4a_
        protein/RNA complex; complexed with hi3, po4
    40. Domains for 3u4o:
      1. 1056232Domain d3u4oa_: 3u4o A: [186076]
        automated match to d1nb4a_
        complexed with 08e, po4
      2. 1056233Domain d3u4ob_: 3u4o B: [186077]
        automated match to d1nb4a_
        complexed with 08e, po4
    41. Domains for 3u4r:
      1. 1056265Domain d3u4ra_: 3u4r A: [186078]
        automated match to d1nb4a_
        complexed with 08f
      2. 1056266Domain d3u4rb_: 3u4r B: [186079]
        automated match to d1nb4a_
        complexed with 08f
  8. 1056304Human rhinovirus 14, HRV-14 [TaxId:12131] [111301] (1 PDB entry)
    Uniprot P03303 1720-2179
  9. 1056306Human rhinovirus 16 [TaxId:31708] [188024] (1 PDB entry)
  10. 1056311Human rhinovirus 16, HRV-16 [TaxId:31708] [111300] (1 PDB entry)
    Uniprot Q82122 1694-2153
  11. 1056314Human rhinovirus 1B, HRV-1B [TaxId:12129] [111299] (1 PDB entry)
    Uniprot P12916 1698-2157
  12. 1056316Norwalk virus [TaxId:11983] [103400] (7 PDB entries)
    1. Domains for 1sh0:
      1. 1056321Domain d1sh0a_: 1sh0 A: [98876]
      2. 1056322Domain d1sh0b_: 1sh0 B: [98877]
    2. Domain for 1sh2:
    3. Domains for 1sh3:
      1. 1056324Domain d1sh3a_: 1sh3 A: [98879]
        complexed with mg
      2. 1056325Domain d1sh3b_: 1sh3 B: [98880]
        complexed with mg
    4. Domain for 3bsn:
    5. Domain for 3bso:
    6. Domain for 3h5x:
    7. Domain for 3h5y:
  13. 1056326Poliovirus type 1, strain Mahoney [TaxId:12080] [56696] (18 PDB entries)
    Uniprot P03300 1748-2208
    1. Domain for 1ra6:
    2. Domain for 1ra7:
    3. Domain for 1raj:
    4. Domain for 1rdr:
    5. Domain for 1tql:
    6. Domains for 2ijd:
      1. 1056362Domain d2ijd12: 2ijd 1:184-644 [137475]
        Other proteins in same PDB: d2ijd11, d2ijd21
        automatically matched to d1ra6a_
        complexed with so4, zn
      2. 1056363Domain d2ijd22: 2ijd 2:184-644 [137477]
        Other proteins in same PDB: d2ijd11, d2ijd21
        automatically matched to d1ra6a_
        complexed with so4, zn
    7. Domain for 2ily:
    8. Domain for 2ilz:
    9. Domain for 2im0:
    10. Domain for 2im1:
    11. Domain for 2im2:
    12. Domain for 2im3:
    13. Domains for 3ol6:
      1. 1056343Domain d3ol6a_: 3ol6 A: [183110]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, zn
      2. 1056344Domain d3ol6e_: 3ol6 E: [183111]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, zn
      3. 1056345Domain d3ol6i_: 3ol6 I: [183112]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, zn
      4. 1056346Domain d3ol6m_: 3ol6 M: [183113]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, zn
    14. Domains for 3ol7:
      1. 1056354Domain d3ol7a_: 3ol7 A: [183114]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
      2. 1056355Domain d3ol7e_: 3ol7 E: [183115]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
      3. 1056356Domain d3ol7i_: 3ol7 I: [183116]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
      4. 1056357Domain d3ol7m_: 3ol7 M: [183117]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
    15. Domains for 3ol8:
      1. 1056358Domain d3ol8a_: 3ol8 A: [183118]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mn, pop, zn
      2. 1056359Domain d3ol8e_: 3ol8 E: [183119]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mn, pop, zn
      3. 1056360Domain d3ol8i_: 3ol8 I: [183120]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mn, pop, zn
      4. 1056361Domain d3ol8m_: 3ol8 M: [183121]
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, ipa, mn, pop, zn
    16. Domains for 3ol9:
      1. 1056328Domain d3ol9a_: 3ol9 A: [183122]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, pop, zn
      2. 1056329Domain d3ol9e_: 3ol9 E: [183123]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, pop, zn
      3. 1056330Domain d3ol9i_: 3ol9 I: [183124]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, pop, zn
      4. 1056331Domain d3ol9m_: 3ol9 M: [183125]
        automated match to d1ra6a_
        protein/RNA complex; complexed with ipa, pop, zn
    17. Domains for 3ola:
      1. 1056348Domain d3olaa_: 3ola A: [183126]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
      2. 1056349Domain d3olae_: 3ola E: [183127]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
      3. 1056350Domain d3olai_: 3ola I: [183128]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
      4. 1056351Domain d3olam_: 3ola M: [183129]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
    18. Domains for 3olb:
      1. 1056337Domain d3olba_: 3olb A: [183130]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dct, ipa, zn
      2. 1056338Domain d3olbe_: 3olb E: [183131]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dct, ipa, zn
      3. 1056339Domain d3olbi_: 3olb I: [183132]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dct, ipa, zn
      4. 1056340Domain d3olbm_: 3olb M: [183133]
        automated match to d1ra6a_
        protein/RNA complex; complexed with dct, ipa, zn
  14. 1056364Rabbit hemorrhagic disease virus [TaxId:11976] [69882] (2 PDB entries)
    1. Domains for 1khv:
      1. 1056365Domain d1khva_: 1khv A: [68627]
        protein/RNA complex; complexed with lu
      2. 1056366Domain d1khvb_: 1khv B: [68628]
        protein/RNA complex; complexed with lu
    2. Domains for 1khw:
      1. 1056367Domain d1khwa_: 1khw A: [68629]
        protein/RNA complex; complexed with mn
      2. 1056368Domain d1khwb_: 1khw B: [68630]
        protein/RNA complex; complexed with mn

More info for Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase

Timeline for Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase: