Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2581738Fold d.129: TBP-like [55944] (11 superfamilies)
    beta-alpha-beta(4)-alpha
  4. 2581959Superfamily d.129.2: Phosphoglucomutase, C-terminal domain [55957] (2 families) (S)
    contains a single copy of this fold and an extra beta-strand at the C-terminus
  5. 2581998Family d.129.2.0: automated matches [254315] (1 protein)
    not a true family
  6. 2581999Protein automated matches [254722] (4 species)
    not a true protein

Species:

  1. 2582000Clupea harengus [TaxId:7950] [397946] (2 PDB entries)
    1. Domain for 6y8y:
    2. Domain for 6y8z:
  2. 2582003Human (Homo sapiens) [TaxId:9606] [316258] (15 PDB entries)
    1. Domains for 5epc:
      1. 2582008Domain d5epca4: 5epc A:422-562 [316627]
        Other proteins in same PDB: d5epca1, d5epca2, d5epca3, d5epca5, d5epcb1, d5epcb2, d5epcb3, d5epcb5
        automated match to d5f9ca4
        complexed with gol, mg, so4
      2. 2582009Domain d5epcb4: 5epc B:422-562 [316632]
        Other proteins in same PDB: d5epca1, d5epca2, d5epca3, d5epca5, d5epcb1, d5epcb2, d5epcb3, d5epcb5
        automated match to d5f9ca4
        complexed with gol, mg, so4
    2. Domains for 5f9c:
      1. 2582020Domain d5f9ca4: 5f9c A:422-562 [316273]
        Other proteins in same PDB: d5f9ca1, d5f9ca2, d5f9ca3, d5f9cb1, d5f9cb2, d5f9cb3
        automated match to d3pmga4
        complexed with gol, mg, so4; mutant
      2. 2582021Domain d5f9cb4: 5f9c B:422-562 [316383]
        Other proteins in same PDB: d5f9ca1, d5f9ca2, d5f9ca3, d5f9cb1, d5f9cb2, d5f9cb3
        automated match to d3pmga4
        complexed with gol, mg, so4; mutant
    3. Domains for 5hsh:
      1. 2582026Domain d5hsha4: 5hsh A:422-562 [316407]
        Other proteins in same PDB: d5hsha1, d5hsha2, d5hsha3, d5hshb1, d5hshb2, d5hshb3
        automated match to d3pmga4
        complexed with so4; mutant
      2. 2582027Domain d5hshb4: 5hsh B:422-562 [316300]
        Other proteins in same PDB: d5hsha1, d5hsha2, d5hsha3, d5hshb1, d5hshb2, d5hshb3
        automated match to d3pmga4
        complexed with so4; mutant
    4. Domains for 5jn5:
      1. 2582004Domain d5jn5a4: 5jn5 A:422-562 [329493]
        Other proteins in same PDB: d5jn5a1, d5jn5a2, d5jn5a3, d5jn5a5, d5jn5b1, d5jn5b2, d5jn5b3
        automated match to d5f9ca4
        complexed with ca, so4
      2. 2582005Domain d5jn5b4: 5jn5 B:422-562 [329450]
        Other proteins in same PDB: d5jn5a1, d5jn5a2, d5jn5a3, d5jn5a5, d5jn5b1, d5jn5b2, d5jn5b3
        automated match to d5f9ca4
        complexed with ca, so4
    5. Domains for 5tr2:
      1. 2582022Domain d5tr2a4: 5tr2 A:422-562 [329666]
        Other proteins in same PDB: d5tr2a1, d5tr2a2, d5tr2a3, d5tr2a5, d5tr2b1, d5tr2b2, d5tr2b3
        automated match to d5f9ca4
        complexed with ca, gol, so4
      2. 2582023Domain d5tr2b4: 5tr2 B:422-562 [329561]
        Other proteins in same PDB: d5tr2a1, d5tr2a2, d5tr2a3, d5tr2a5, d5tr2b1, d5tr2b2, d5tr2b3
        automated match to d5f9ca4
        complexed with ca, gol, so4
    6. Domains for 5vbi:
      1. 2582006Domain d5vbia4: 5vbi A:422-562 [353767]
        Other proteins in same PDB: d5vbia1, d5vbia2, d5vbia3, d5vbia5, d5vbib1, d5vbib2, d5vbib3
        automated match to d5jn5a4
        complexed with gol, mg, so4
      2. 2582007Domain d5vbib4: 5vbi B:422-562 [353748]
        Other proteins in same PDB: d5vbia1, d5vbia2, d5vbia3, d5vbia5, d5vbib1, d5vbib2, d5vbib3
        automated match to d5jn5a4
        complexed with gol, mg, so4
    7. Domains for 5vec:
      1. 2582016Domain d5veca4: 5vec A:422-562 [354138]
        Other proteins in same PDB: d5veca1, d5veca2, d5veca3, d5veca5, d5vecb1, d5vecb2, d5vecb3, d5vecb5
        automated match to d5jn5a4
        complexed with gol, mg, so4
      2. 2582017Domain d5vecb4: 5vec B:422-562 [353980]
        Other proteins in same PDB: d5veca1, d5veca2, d5veca3, d5veca5, d5vecb1, d5vecb2, d5vecb3, d5vecb5
        automated match to d5jn5a4
        complexed with gol, mg, so4
    8. Domains for 5vg7:
      1. 2582010Domain d5vg7a4: 5vg7 A:422-562 [353818]
        Other proteins in same PDB: d5vg7a1, d5vg7a2, d5vg7a3, d5vg7a5, d5vg7b1, d5vg7b2, d5vg7b3, d5vg7b5
        automated match to d5jn5a4
      2. 2582011Domain d5vg7b4: 5vg7 B:422-562 [353732]
        Other proteins in same PDB: d5vg7a1, d5vg7a2, d5vg7a3, d5vg7a5, d5vg7b1, d5vg7b2, d5vg7b3, d5vg7b5
        automated match to d5jn5a4
        complexed with gol, mg, so4
    9. Domains for 5vin:
      1. 2582024Domain d5vina4: 5vin A:422-562 [354011]
        Other proteins in same PDB: d5vina1, d5vina2, d5vina3, d5vina5, d5vinb1, d5vinb2, d5vinb3
        automated match to d5jn5a4
        complexed with co, gol, so4
      2. 2582025Domain d5vinb4: 5vin B:422-562 [354017]
        Other proteins in same PDB: d5vina1, d5vina2, d5vina3, d5vina5, d5vinb1, d5vinb2, d5vinb3
        automated match to d5jn5a4
        complexed with co, gol, so4
    10. Domains for 6bj0:
      1. 2582018Domain d6bj0a4: 6bj0 A:422-562 [358833]
        Other proteins in same PDB: d6bj0a1, d6bj0a2, d6bj0a3, d6bj0a5, d6bj0b1, d6bj0b2, d6bj0b3, d6bj0b5
        automated match to d5jn5a4
        complexed with g6p, mg
      2. 2582019Domain d6bj0b4: 6bj0 B:422-562 [358863]
        Other proteins in same PDB: d6bj0a1, d6bj0a2, d6bj0a3, d6bj0a5, d6bj0b1, d6bj0b2, d6bj0b3, d6bj0b5
        automated match to d5jn5a4
        complexed with g6p, mg
    11. Domain for 6sno:
    12. Domain for 6snp:
    13. Domain for 6snq:
    14. Domains for 6uiq:
      1. 2582012Domain d6uiqa4: 6uiq A:422-562 [392383]
        Other proteins in same PDB: d6uiqa1, d6uiqa2, d6uiqa3, d6uiqa5, d6uiqb1, d6uiqb2, d6uiqb3, d6uiqb5
        automated match to d5jn5a4
        complexed with g6p, mg
      2. 2582013Domain d6uiqb4: 6uiq B:422-562 [392326]
        Other proteins in same PDB: d6uiqa1, d6uiqa2, d6uiqa3, d6uiqa5, d6uiqb1, d6uiqb2, d6uiqb3, d6uiqb5
        automated match to d5jn5a4
        complexed with g6p, mg
    15. Domains for 6uo6:
      1. 2582014Domain d6uo6a4: 6uo6 A:422-562 [382014]
        Other proteins in same PDB: d6uo6a1, d6uo6a2, d6uo6a3, d6uo6a5, d6uo6b1, d6uo6b2, d6uo6b3, d6uo6b5
        automated match to d5jn5a4
        complexed with mg, so4
      2. 2582015Domain d6uo6b4: 6uo6 B:422-562 [382053]
        Other proteins in same PDB: d6uo6a1, d6uo6a2, d6uo6a3, d6uo6a5, d6uo6b1, d6uo6b2, d6uo6b3, d6uo6b5
        automated match to d5jn5a4
        complexed with mg, so4
  3. 2582031Pseudomonas aeruginosa [TaxId:287] [256064] (1 PDB entry)
  4. 2582033Pseudomonas aeruginosa, PA01 [TaxId:208964] [256305] (2 PDB entries)
    1. Domain for 4il8:
    2. Domain for 4mrq:

More info for Protein automated matches from d.129.2.0: automated matches

Timeline for Protein automated matches from d.129.2.0: automated matches: