Lineage for Species: Sea lamprey (Petromyzon marinus) [TaxId: 7757]

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2459922Fold c.10: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) [52046] (3 superfamilies)
    2 curved layers, a/b; parallel beta-sheet; order 1234...N; there are sequence similarities between different superfamilies
  4. 2459991Superfamily c.10.2: L domain-like [52058] (9 families) (S)
    less regular structure consisting of variable repeats
  5. 2460208Family c.10.2.0: automated matches [191489] (1 protein)
    not a true family
  6. 2460209Protein automated matches [190787] (14 species)
    not a true protein
  7. 2460291Species Sea lamprey (Petromyzon marinus) [TaxId:7757] [231246] (18 PDB entries)

PDB entries in Species: Sea lamprey (Petromyzon marinus) [TaxId: 7757]:

  1. Domain(s) for 2r9u:
    1. 2460308Domain d2r9ua1: 2r9u A:22-190 [231247]
      Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
      automated match to d2o6ra_
    2. 2460309Domain d2r9ub1: 2r9u B:22-190 [231248]
      Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
      automated match to d2o6ra_
    3. 2460310Domain d2r9uc1: 2r9u C:22-190 [231249]
      Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
      automated match to d2o6ra_
    4. 2460311Domain d2r9ud1: 2r9u D:22-190 [231250]
      Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
      automated match to d2o6ra_
  2. Domain(s) for 3e6j:
  3. Domain(s) for 3g39:
  4. Domain(s) for 3g3a:
    1. 2460317Domain d3g3aa_: 3g3a A: [232233]
      Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
      automated match to d2o6ra_
    2. 2460318Domain d3g3ac_: 3g3a C: [232234]
      Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
      automated match to d2o6ra_
    3. 2460319Domain d3g3ae_: 3g3a E: [232235]
      Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
      automated match to d2o6ra_
    4. 2460320Domain d3g3ag_: 3g3a G: [239291]
      Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
      automated match to d3g3aa_
  5. Domain(s) for 3g3b:
    1. 2460332Domain d3g3ba_: 3g3b A: [232236]
      Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
      automated match to d2o6ra_
      mutant
    2. 2460333Domain d3g3bc_: 3g3b C: [232237]
      Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
      automated match to d2o6ra_
      mutant
    3. 2460334Domain d3g3be_: 3g3b E: [239292]
      Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
      automated match to d3g3ba_
      mutant
  6. Domain(s) for 3twi:
    1. 2460321Domain d3twid_: 3twi D: [233750]
      automated match to d2o6ra_
      complexed with gol
    2. 2460322Domain d3twie1: 3twi E:21-185 [233752]
      automated match to d2o6ra_
      complexed with gol
    3. 2460323Domain d3twif_: 3twi F: [233751]
      automated match to d2o6ra_
      complexed with gol
  7. Domain(s) for 4k5u:
    1. 2460295Domain d4k5ua_: 4k5u A: [390439]
      automated match to d3e6ja_
      complexed with gal
    2. 2460296Domain d4k5ub_: 4k5u B: [390401]
      automated match to d3e6ja_
      complexed with gal
    3. 2460297Domain d4k5uc_: 4k5u C: [390411]
      automated match to d3e6ja_
      complexed with gal
    4. 2460298Domain d4k5ud_: 4k5u D: [390426]
      automated match to d3e6ja_
      complexed with gal
  8. Domain(s) for 4k79:
    1. 2460312Domain d4k79a_: 4k79 A: [390440]
      automated match to d3e6ja_
    2. 2460313Domain d4k79b_: 4k79 B: [390438]
      automated match to d3e6ja_
    3. 2460314Domain d4k79c_: 4k79 C: [390481]
      automated match to d3e6ja_
    4. 2460315Domain d4k79d_: 4k79 D: [390455]
      automated match to d3e6ja_
  9. Domain(s) for 5uei:
  10. Domain(s) for 5uf1:
    1. 2460327Domain d5uf1a_: 5uf1 A: [365214]
      automated match to d3e6ja_
      complexed with cl, fuc, gal, nag
    2. 2460328Domain d5uf1b_: 5uf1 B: [365212]
      automated match to d3e6ja_
      complexed with cl, fuc, gal, nag
  11. Domain(s) for 5uf4:
    1. 2460329Domain d5uf4a_: 5uf4 A: [365224]
      automated match to d3e6ja_
      complexed with gal, glc, nag
    2. 2460330Domain d5uf4b_: 5uf4 B: [365211]
      automated match to d3e6ja_
      complexed with gal, glc, nag
    3. 2460331Domain d5uf4c_: 5uf4 C: [365213]
      automated match to d3e6ja_
      complexed with gal, glc, nag
  12. Domain(s) for 5ufb:
  13. Domain(s) for 5ufc:
    1. 2460324Domain d5ufca_: 5ufc A: [378135]
      automated match to d3e6ja_
      complexed with dr2
    2. 2460325Domain d5ufcb_: 5ufc B: [378142]
      automated match to d3e6ja_
      complexed with dr2
    3. 2460326Domain d5ufcc_: 5ufc C: [378139]
      automated match to d3e6ja_
      complexed with dr2
  14. Domain(s) for 5ufd:
    1. 2460306Domain d5ufda_: 5ufd A: [345855]
      automated match to d5wk4e_
      complexed with mg
    2. 2460307Domain d5ufdb_: 5ufd B: [345856]
      automated match to d5wk4e_
      complexed with mg
  15. Domain(s) for 5uff:
  16. Domain(s) for 5wk4:
    1. 2460299Domain d5wk4a_: 5wk4 A: [342906]
      automated match to d2o6ra_
      complexed with mg
    2. 2460300Domain d5wk4b_: 5wk4 B: [342923]
      automated match to d2o6ra_
      complexed with mg
    3. 2460301Domain d5wk4c_: 5wk4 C: [342937]
      automated match to d2o6ra_
      complexed with mg
    4. 2460302Domain d5wk4d_: 5wk4 D: [342920]
      automated match to d2o6ra_
      complexed with mg
    5. 2460303Domain d5wk4e_: 5wk4 E: [342932]
      automated match to d2o6ra_
      complexed with mg
    6. 2460304Domain d5wk4f_: 5wk4 F: [342868]
      automated match to d2o6ra_
      complexed with mg
  17. Domain(s) for 6bxa:
    1. 2460336Domain d6bxac_: 6bxa C: [351820]
      automated match to d3e6ja_
      complexed with edo, nag
    2. 2460337Domain d6bxad_: 6bxa D: [351817]
      automated match to d3e6ja_
      complexed with edo, nag
  18. Domain(s) for 6bxd:

More info for Species Sea lamprey (Petromyzon marinus) [TaxId:7757] from c.10.2.0 automated matches

Timeline for Species Sea lamprey (Petromyzon marinus) [TaxId:7757] from c.10.2.0 automated matches: