PDB entry 5wk4

View 5wk4 on RCSB PDB site
Description: Crystal structure of an anti-idiotype VLR
Class: immune system
Keywords: leucine-rich repeat antibody antigen receptor, IMMUNE SYSTEM
Deposited on 2017-07-24, released 2017-12-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-12-20, with a file datestamp of 2017-12-15.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Variable lymphocyte receptor 39
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5WK4
    Domains in SCOPe 2.07: d5wk4a_
  • Chain 'B':
    Compound: Variable lymphocyte receptor 39
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5WK4
    Domains in SCOPe 2.07: d5wk4b_
  • Chain 'C':
    Compound: Variable lymphocyte receptor 39
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5WK4
    Domains in SCOPe 2.07: d5wk4c_
  • Chain 'D':
    Compound: Variable lymphocyte receptor 39
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5WK4
    Domains in SCOPe 2.07: d5wk4d_
  • Chain 'E':
    Compound: Variable lymphocyte receptor 39
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5WK4 (Start-200)
    Domains in SCOPe 2.07: d5wk4e_
  • Chain 'F':
    Compound: Variable lymphocyte receptor 39
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5WK4 (Start-200)
    Domains in SCOPe 2.07: d5wk4f_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5wk4A (A:)
pghhhhhhggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfds
ltaltflnvgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtn
qlksiprgafdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkc
sgtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5wk4A (A:)
cpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfdsltaltflnvg
dnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtnqlksiprgaf
dnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkcsgtntpvrav
teastspskc

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5wk4B (B:)
pghhhhhhggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfds
ltaltflnvgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtn
qlksiprgafdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkc
sgtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5wk4B (B:)
ggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfdsltaltfln
vgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtnqlksiprg
afdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkcsgtntpvr
avteastspskc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5wk4C (C:)
pghhhhhhggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfds
ltaltflnvgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtn
qlksiprgafdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkc
sgtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5wk4C (C:)
ggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfdsltaltfln
vgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtnqlksiprg
afdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkcsgtntpvr
avteastspskc

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5wk4D (D:)
pghhhhhhggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfds
ltaltflnvgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtn
qlksiprgafdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkc
sgtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5wk4D (D:)
ggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfdsltaltfln
vgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtnqlksiprg
afdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkcsgtntpvr
avteastspskc

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5wk4E (E:)
pghhhhhhggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfds
ltaltflnvgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtn
qlksiprgafdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkc
sgtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5wk4E (E:)
cpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfdsltaltflnvg
dnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtnqlksiprgaf
dnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkcsgtntpvrav
teastspskcp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5wk4F (F:)
pghhhhhhggcpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfds
ltaltflnvgdnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtn
qlksiprgafdnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkc
sgtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5wk4F (F:)
cpsqcscrgttvncdsrslasvpagiptdrqnlwlnnnqitklepgvfdsltaltflnvg
dnqlsalpigvfdrlaqltrlglshnqftalpagvfdklpklthlvlhtnqlksiprgaf
dnlkslthiylfnnpwdcecsdilylknwivqhasivnphpyggvdnvkcsgtntpvrav
teastspskcp