PDB entry 5ufd

View 5ufd on RCSB PDB site
Description: Crystal Structure of Variable Lymphocyte Receptor (VLR) RBC36 (Apo)
Class: immune system
Keywords: variable lymphocyte receptors, VLR, leucine-rich repeat, LRR, adaptive immunity, immune system, sea lamprey, jawless fish, receptor, glycan binding, glycan receptor
Deposited on 2017-01-04, released 2017-10-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rbc36
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UFD (0-228)
    Domains in SCOPe 2.07: d5ufda_
  • Chain 'B':
    Compound: rbc36
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UFD (Start-228)
    Domains in SCOPe 2.07: d5ufdb_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ufdA (A:)
adpghhhhhhggcpsqcscsgttvdcrskrhasvpagiptnaqilylhdnqitklepgvf
dslinlkelylgsnqlgalpvgvfdsltqltvldlgtnqltvlpsavfdrlvhlkelfmc
cnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfgnpwdcecrdimy
lrnwvadhtsiamrwdgkavndpdsakcagtntpvravteastspskcp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ufdB (B:)
adpghhhhhhggcpsqcscsgttvdcrskrhasvpagiptnaqilylhdnqitklepgvf
dslinlkelylgsnqlgalpvgvfdsltqltvldlgtnqltvlpsavfdrlvhlkelfmc
cnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfgnpwdcecrdimy
lrnwvadhtsiamrwdgkavndpdsakcagtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5ufdB (B:)
dpghhhhhhggcpsqcscsgttvdcrskrhasvpagiptnaqilylhdnqitklepgvfd
slinlkelylgsnqlgalpvgvfdsltqltvldlgtnqltvlpsavfdrlvhlkelfmcc
nkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfgnpwdcecrdimyl
rnwvadhtsiamrwdgkavndpdsakcagtntpvravteastspskcp