PDB entry 5uf1
View 5uf1 on RCSB PDB site
Description: Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 in complex with H-trisaccharide
Class: immune system
Keywords: variable lymphocyte receptors, VLR, leucine-rich repeat, LRR, adaptive immunity, immune system, sea lamprey, jawless fish, receptor, glycan binding, glycan receptor
Deposited on
2017-01-03, released
2017-10-18
The last revision prior to the SCOPe 2.07 freeze date was dated
2019-02-20, with a file datestamp of
2019-02-15.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: o13
Species: Petromyzon marinus [TaxId:7757]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5uf1a_ - Chain 'B':
Compound: o13
Species: Petromyzon marinus [TaxId:7757]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5uf1b_ - Heterogens: FUC, GAL, NAG, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5uf1A (A:)
hhhhhhcpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnl
qtlwlnnnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsa
lpsavfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslt
haylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteas
tspskcp
Sequence, based on observed residues (ATOM records): (download)
>5uf1A (A:)
cpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnlqtlwln
nnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsalpsavf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc
p
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5uf1B (B:)
hhhhhhcpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnl
qtlwlnnnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsa
lpsavfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslt
haylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteas
tspskcp
Sequence, based on observed residues (ATOM records): (download)
>5uf1B (B:)
cpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnlqtlwln
nnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsalpsavf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc
p