PDB entry 5uf4

View 5uf4 on RCSB PDB site
Description: Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 with LNnT bound
Class: immune system
Keywords: variable lymphocyte receptors, VLR, leucine-rich repeat, LRR, adaptive immunity, immune system, sea lamprey, jawless fish, receptor, glycan binding, glycan receptor
Deposited on 2017-01-03, released 2017-10-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-02-20, with a file datestamp of 2019-02-15.
Experiment type: XRAY
Resolution: 2.04 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: o13
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UF4 (Start-248)
    Domains in SCOPe 2.07: d5uf4a_
  • Chain 'B':
    Compound: o13
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UF4 (Start-248)
    Domains in SCOPe 2.07: d5uf4b_
  • Chain 'C':
    Compound: o13
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UF4 (Start-248)
    Domains in SCOPe 2.07: d5uf4c_
  • Heterogens: GLC, GAL, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5uf4A (A:)
hhhhhhggcpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlv
nlqtlwlnnnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnql
salpsavfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlss
lthaylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravte
astspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5uf4A (A:)
cpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnlqtlwln
nnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsalpsavf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc
p

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5uf4B (B:)
hhhhhhggcpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlv
nlqtlwlnnnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnql
salpsavfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlss
lthaylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravte
astspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5uf4B (B:)
cpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnlqtlwln
nnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsalpsavf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc
p

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5uf4C (C:)
hhhhhhggcpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlv
nlqtlwlnnnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnql
salpsavfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlss
lthaylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravte
astspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5uf4C (C:)
cpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnlqtlwln
nnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsalpsavf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc
p