SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.122: PUA domain-like [88696] (1 superfamily)
pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other
Superfamily b.122.1: PUA domain-like [88697] (14 families)
Family b.122.1.0: automated matches [191599] (1 protein)
not a true family
Protein automated matches [191089] (7 species)
not a true protein

Species:

Allochromatium vinosum [TaxId:572477] [226588] (1 PDB entry)
- Domains for 4dnx:
  1. Domain d4dnxa1: 4dnx A:1-173 [219874]
    Other proteins in same PDB: d4dnxa2, d4dnxb2
    automated match to d1jhda1
    complexed with mes
  2. Domain d4dnxb1: 4dnx B:1-173 [219876]
    Other proteins in same PDB: d4dnxa2, d4dnxb2
    automated match to d1jhda1
    complexed with mes
Escherichia coli K-12 [TaxId:83333] [226465] (1 PDB entry)
- Domain for 4e8b:
  - Domain d4e8ba1: 4e8b A:3-73 [220358]
    Other proteins in same PDB: d4e8ba2, d4e8ba3
    automated match to d1vhya1
Human (Homo sapiens) [TaxId:9606] [189059] (2 PDB entries)
1. Domains for 2qjf:
  1. Domain d2qjfa1: 2qjf A:233-392 [205827]
    Other proteins in same PDB: d2qjfa2, d2qjfb2
    automated match to d1jhda1
    complexed with adx, k
  2. Domain d2qjfb1: 2qjf B:232-392 [205829]
    Other proteins in same PDB: d2qjfa2, d2qjfb2
    automated match to d1jhda1
    complexed with adx, k
2. Domains for 3eop:
  1. Domain d3eopa1: 3eop A:55-221 [175137]
    Other proteins in same PDB: d3eopa2, d3eopb2
    automated match to d2ar1a1
    complexed with so4
  2. Domain d3eopb1: 3eop B:55-221 [175138]
    Other proteins in same PDB: d3eopa2, d3eopb2
    automated match to d2ar1a1
    complexed with so4

Legionella pneumophila [TaxId:446] [341248] (2 PDB entries)

Domains for 5o95:
1. Domain d5o95a1: 5o95 A:3-75 [341255]
  Other proteins in same PDB: d5o95a2, d5o95b2, d5o95b3, d5o95c2, d5o95c3, d5o95d2
  automated match to d4e8ba1
2. Domain d5o95b1: 5o95 B:2-75 [341282]
  Other proteins in same PDB: d5o95a2, d5o95b2, d5o95b3, d5o95c2, d5o95c3, d5o95d2
  automated match to d4e8ba1
3. Domain d5o95c1: 5o95 C:2-75 [341285]
  Other proteins in same PDB: d5o95a2, d5o95b2, d5o95b3, d5o95c2, d5o95c3, d5o95d2
  automated match to d4e8ba1
4. Domain d5o95d1: 5o95 D:4-75 [341249]
  Other proteins in same PDB: d5o95a2, d5o95b2, d5o95b3, d5o95c2, d5o95c3, d5o95d2
  automated match to d4e8ba1

Domains for 5o96:

Domain d5o96a1: 5o96 A:3-75 [341268]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Domain d5o96b1: 5o96 B:3-75 [341264]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Domain d5o96c1: 5o96 C:3-75 [341332]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Domain d5o96d1: 5o96 D:2-75 [341330]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Domain d5o96e1: 5o96 E:3-75 [341253]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Domain d5o96f1: 5o96 F:3-75 [341261]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Domain d5o96g1: 5o96 G:3-75 [341403]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Domain d5o96h1: 5o96 H:3-75 [341266]
Other proteins in same PDB: d5o96a2, d5o96b2, d5o96c2, d5o96d2, d5o96e2, d5o96f2, d5o96g2, d5o96h2
automated match to d4e8ba1
protein/RNA complex; complexed with sam

Pyrococcus abyssi [TaxId:29292] [225092] (1 PDB entry)
- Domains for 2aus:
  1. Domain d2ausa2: 2aus A:249-334 [197766]
    Other proteins in same PDB: d2ausa1, d2ausb_, d2ausc1, d2ausd_
    automated match to d2apoa1
    complexed with po4, zn
  2. Domain d2ausc2: 2aus C:249-334 [197768]
    Other proteins in same PDB: d2ausa1, d2ausb_, d2ausc1, d2ausd_
    automated match to d2apoa1
    complexed with po4, zn
Pyrococcus furiosus [TaxId:2261] [225693] (3 PDB entries)
1. Domain for 2rfk:
  - Domain d2rfka1: 2rfk A:253-341 [151996]
    Other proteins in same PDB: d2rfka2, d2rfkb_, d2rfkc_
    automated match to d2ey4a1
    protein/RNA complex; complexed with zn
2. Domain for 3hjw:
  - Domain d3hjwa2: 3hjw A:252-337 [199517]
    Other proteins in same PDB: d3hjwa1, d3hjwb_
    automated match to d2apoa1
    protein/RNA complex; complexed with k, zn
3. Domain for 3mqk:
  - Domain d3mqka2: 3mqk A:252-338 [199870]
    Other proteins in same PDB: d3mqka1, d3mqkb_, d3mqkc_
    automated match to d2apoa1
    protein/RNA complex

Soybean (Glycine max) [TaxId:3847] [237646] (1 PDB entry)

Domains for 4maf:

Domain d4mafa1: 4maf A:48-218 [237647]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d1g8fa1
complexed with adx

Domain d4mafb1: 4maf B:48-218 [238193]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d4mafc1
complexed with adx

Domain d4mafc1: 4maf C:48-218 [237648]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d1g8fa1
complexed with adx

Domain d4mafd1: 4maf D:48-218 [238195]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d4mafa1
complexed with adx

Domain d4mafe1: 4maf E:48-218 [238197]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d4mafc1
complexed with adx

Domain d4maff1: 4maf F:48-218 [238201]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d4mafa1
complexed with adx

Domain d4mafg1: 4maf G:48-218 [238199]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d4mafc1
complexed with adx

Domain d4mafh1: 4maf H:49-218 [238203]
Other proteins in same PDB: d4mafa2, d4mafb2, d4mafb3, d4mafc2, d4mafc3, d4mafd2, d4mafe2, d4mafe3, d4maff2, d4mafg2, d4mafg3, d4mafh2
automated match to d4mafa1
complexed with adx

More info for Protein automated matches from b.122.1.0: automated matches

Timeline for Protein automated matches from b.122.1.0: automated matches:

Protein automated matches from b.122.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.122.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.122.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from b.122.1.0: automated matches appears in the current release, SCOPe 2.08