Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1815292Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1816697Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. 1816698Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)
  6. 1817085Protein automated matches [190228] (15 species)
    not a true protein

Species:

  1. 1817086Geobacillus kaustophilus [TaxId:235909] [257133] (2 PDB entries)
    1. Domains for 4nae:
      1. 1817089Domain d4naea_: 4nae A: [257134]
        automated match to d3vzxb_
        complexed with 1gp, pe4
      2. 1817090Domain d4naeb_: 4nae B: [257135]
        automated match to d3vzya_
        complexed with 1gp, pe4
    2. Domains for 4naf:
      1. 1817087Domain d4nafa_: 4naf A: [257136]
        automated match to d3vzya_
      2. 1817088Domain d4nafb_: 4naf B: [257137]
        automated match to d1viza_
  2. 1817091Human (Homo sapiens) [TaxId:9606] [187000] (8 PDB entries)
    1. Domain for 2bxv:
    2. Domain for 2wv8:
    3. Domain for 3fj6:
    4. Domain for 3fjl:
    5. Domain for 3g0u:
    6. Domain for 3g0x:
    7. Domain for 3zwt:
    8. Domain for 4oqv:
  3. 1817100Lactococcus lactis [TaxId:1358] [186992] (2 PDB entries)
    1. Domains for 2bsl:
      1. 1817103Domain d2bsla_: 2bsl A: [129095]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
      2. 1817104Domain d2bslb_: 2bsl B: [129096]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
    2. Domains for 2bx7:
      1. 1817101Domain d2bx7a_: 2bx7 A: [129395]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
      2. 1817102Domain d2bx7b_: 2bx7 B: [129396]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
  4. 1817105Leishmania braziliensis [TaxId:5660] [272759] (1 PDB entry)
  5. 1817108Leishmania donovani [TaxId:5661] [188354] (1 PDB entry)
  6. 1817113Leishmania major [TaxId:347515] [255968] (3 PDB entries)
    1. Domains for 3mhu:
      1. 1817114Domain d3mhua_: 3mhu A: [247707]
        automated match to d3c61a_
        complexed with ejz, fmn, gol, so4
      2. 1817115Domain d3mhub_: 3mhu B: [247708]
        automated match to d3c61a_
        complexed with ejz, fmn, gol, so4
    2. Domains for 3tq0:
      1. 1817116Domain d3tq0a_: 3tq0 A: [249976]
        automated match to d3c61a_
        complexed with fmn, fum, gol, ni, so4
      2. 1817117Domain d3tq0b_: 3tq0 B: [249977]
        automated match to d3c61a_
        complexed with fmn, fum, gol, ni, so4
    3. Domains for 3tro:
      1. 1817118Domain d3troa_: 3tro A: [249994]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
      2. 1817119Domain d3trob_: 3tro B: [249995]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
  7. 1817120Leishmania major [TaxId:5664] [255853] (6 PDB entries)
    1. Domains for 3gye:
      1. 1817131Domain d3gyea_: 3gye A: [246388]
        automated match to d3c61a_
        complexed with fmn, gol
      2. 1817132Domain d3gyeb_: 3gye B: [246389]
        automated match to d3c61a_
        complexed with fmn, gol
    2. Domains for 3gz3:
      1. 1817129Domain d3gz3a_: 3gz3 A: [246394]
        automated match to d3c61a_
        complexed with fmn, gol, oro
      2. 1817130Domain d3gz3b_: 3gz3 B: [246395]
        automated match to d3c61a_
        complexed with fmn, gol, oro
    3. Domains for 3mjy:
      1. 1817127Domain d3mjya_: 3mjy A: [247733]
        automated match to d3c61a_
        complexed with fmn, gol, ijz, so4
      2. 1817128Domain d3mjyb_: 3mjy B: [247734]
        automated match to d3c61a_
        complexed with fmn, gol, ijz, so4
    4. Domains for 3tjx:
      1. 1817125Domain d3tjxa_: 3tjx A: [249919]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
      2. 1817126Domain d3tjxb_: 3tjx B: [249920]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
    5. Domains for 4ef8:
      1. 1817121Domain d4ef8a_: 4ef8 A: [251739]
        automated match to d3c61a_
        complexed with 0fi, fmn, gol, so4
      2. 1817122Domain d4ef8b_: 4ef8 B: [251740]
        automated match to d3c61a_
        complexed with 0fi, fmn, gol, so4
    6. Domains for 4ef9:
      1. 1817123Domain d4ef9a_: 4ef9 A: [251741]
        automated match to d3c61a_
        complexed with 4nf, fmn, gol, so4
      2. 1817124Domain d4ef9b_: 4ef9 B: [251742]
        automated match to d3c61a_
        complexed with 4nf, fmn, gol, so4
  8. 1817133Malaria parasite (Plasmodium falciparum) [TaxId:5833] [256645] (8 PDB entries)
    1. Domains for 4cq8:
      1. 1817134Domain d4cq8a_: 4cq8 A: [256646]
        automated match to d1tv5a1
        complexed with fmn, jbw, oro
      2. 1817135Domain d4cq8b_: 4cq8 B: [256647]
        automated match to d1tv5a1
        complexed with fmn, jbw, oro
    2. Domains for 4cq9:
      1. 1817142Domain d4cq9a_: 4cq9 A: [266032]
        automated match to d4cq8a_
        complexed with fmn, oro, xbl
      2. 1817143Domain d4cq9b_: 4cq9 B: [266033]
        automated match to d4cq8a_
        complexed with fmn, oro, xbl
    3. Domains for 4cqa:
      1. 1817140Domain d4cqaa_: 4cqa A: [266034]
        automated match to d4cq8a_
        complexed with fmn, id6, oro
      2. 1817141Domain d4cqab_: 4cqa B: [266035]
        automated match to d4cq8a_
        complexed with fmn, id6, oro
    4. Domain for 4orm:
    5. Domain for 4rx0:
    6. Domain for 4ryh:
    7. Domains for 5boo:
      1. 1817144Domain d5booa_: 5boo A: [275348]
        automated match to d4cq8a_
        complexed with d65, fmn, oro
      2. 1817145Domain d5boob_: 5boo B: [275349]
        automated match to d4cq8a_
        complexed with d65, fmn, oro
    8. Domain for 5del:
  9. 1817146Norway rat (Rattus norvegicus) [TaxId:10116] [195883] (2 PDB entries)
    1. Domains for 3sgz:
      1. 1817147Domain d3sgza_: 3sgz A: [200657]
        automated match to d3sgzc_
        complexed with fmn, ho6
      2. 1817148Domain d3sgzb_: 3sgz B: [200658]
        automated match to d3sgzc_
        complexed with fmn, ho6
      3. 1817149Domain d3sgzc_: 3sgz C: [195884]
        automated match to d1tb3a1
        complexed with fmn, ho6
    2. Domain for 4ori:
  10. 1817151Plasmodium falciparum [TaxId:36329] [189697] (5 PDB entries)
    1. Domain for 3i65:
    2. Domain for 3i68:
    3. Domain for 3i6r:
    4. Domain for 3o8a:
    5. Domain for 3sfk:
  11. 1817157Pseudomonas putida [TaxId:303] [225091] (4 PDB entries)
    1. Domain for 2a7n:
    2. Domain for 2a7p:
    3. Domain for 2a85:
    4. Domain for 3giy:
  12. 1817162Solanum lycopersicum [TaxId:4081] [187823] (5 PDB entries)
    1. Domains for 2hs6:
      1. 1817165Domain d2hs6a_: 2hs6 A: [165230]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
      2. 1817166Domain d2hs6b_: 2hs6 B: [165231]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
    2. Domains for 2hs8:
      1. 1817169Domain d2hs8a_: 2hs8 A: [165232]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. 1817170Domain d2hs8b_: 2hs8 B: [165233]
        automated match to d1q45a_
        complexed with fmn; mutant
    3. Domains for 2hsa:
      1. 1817163Domain d2hsaa_: 2hsa A: [165234]
        automated match to d1q45a_
        complexed with cl, fmn, so4
      2. 1817164Domain d2hsab_: 2hsa B: [165235]
        automated match to d1q45a_
        complexed with cl, fmn, so4
    4. Domains for 3hgo:
      1. 1817171Domain d3hgoa_: 3hgo A: [177552]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. 1817172Domain d3hgob_: 3hgo B: [177553]
        automated match to d1q45a_
        complexed with fmn; mutant
    5. Domains for 3hgs:
      1. 1817167Domain d3hgsa_: 3hgs A: [177557]
        automated match to d1q45a_
        complexed with fmn, phb
      2. 1817168Domain d3hgsb_: 3hgs B: [177558]
        automated match to d1q45a_
        complexed with fmn, phb
  13. 1817173Thale cress (Arabidopsis thaliana) [TaxId:3702] [187180] (2 PDB entries)
    1. Domains for 2q3o:
      1. 1817174Domain d2q3oa_: 2q3o A: [139796]
        automated match to d1q45a_
        complexed with fmn
      2. 1817175Domain d2q3ob_: 2q3o B: [139797]
        automated match to d1q45a_
        complexed with fmn
    2. Domain for 2q3r:
  14. 1817177Thermus thermophilus [TaxId:274] [254915] (1 PDB entry)
  15. 1817182Trypanosoma cruzi [TaxId:5693] [187324] (7 PDB entries)
    1. Domains for 2djl:
      1. 1817183Domain d2djla_: 2djl A: [163640]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
      2. 1817184Domain d2djlb_: 2djl B: [163641]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
    2. Domains for 2djx:
      1. 1817189Domain d2djxa_: 2djx A: [163642]
        automated match to d2b4ga1
        complexed with fmn, nco
      2. 1817190Domain d2djxb_: 2djx B: [163643]
        automated match to d2b4ga1
        complexed with fmn, nco
    3. Domains for 2e68:
      1. 1817185Domain d2e68a_: 2e68 A: [163844]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
      2. 1817186Domain d2e68b_: 2e68 B: [163845]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
    4. Domains for 2e6a:
      1. 1817191Domain d2e6aa_: 2e6a A: [163850]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
      2. 1817192Domain d2e6ab_: 2e6a B: [163851]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
    5. Domains for 2e6d:
      1. 1817193Domain d2e6da_: 2e6d A: [163860]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
      2. 1817194Domain d2e6db_: 2e6d B: [163861]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
    6. Domains for 2e6f:
      1. 1817187Domain d2e6fa_: 2e6f A: [163866]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
      2. 1817188Domain d2e6fb_: 2e6f B: [163867]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
    7. Domains for 3c3n:
      1. 1817195Domain d3c3na_: 3c3n A: [173021]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      2. 1817196Domain d3c3nb_: 3c3n B: [173022]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      3. 1817197Domain d3c3nc_: 3c3n C: [173023]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      4. 1817198Domain d3c3nd_: 3c3n D: [173024]
        automated match to d2b4ga1
        complexed with fmn, gol, so4

More info for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases

Timeline for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases: