Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies) contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 the first seven superfamilies have similar phosphate-binding sites |
Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) |
Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins) |
(S)-3-O-geranylgeranylglyceryl phosphate synthase [141765] (1 species) |
Species Archaeoglobus fulgidus [TaxId:2234] [141766] (2 PDB entries) Uniprot O29844 1-231 PcrB homolog AF0403 |
12-oxophytodienoate reductase (OPR, OYE homolog) [63896] (3 species) |
Species Thale cress (Arabidopsis thaliana), OPR1 [TaxId:3702] [102040] (1 PDB entry) At1G76680 |
Species Thale cress (Arabidopsis thaliana), OPR3 [TaxId:3702] [102041] (2 PDB entries) |
Species Tomato (Lycopersicon esculentum), OPR1 [TaxId:4081] [63897] (4 PDB entries) |
2,4-dienoyl-CoA reductase, N-terminal domain [102042] (1 species) |
Species Escherichia coli [TaxId:562] [102043] (1 PDB entry) |
Alpha subunit of glutamate synthase, central and FMN domains [69381] (2 species) Central domain (residues 423-780) may be a rudiment form of the FMN domain |
Species Azospirillum brasilense [TaxId:192] [69382] (2 PDB entries) |
Species Synechocystis sp. [TaxId:1143] [75055] (5 PDB entries) |
Dihydroorotate dehydrogenase [51397] (8 species) |
Species Escherichia coli [TaxId:562] [82239] (1 PDB entry) |
Species Human (Homo sapiens) [TaxId:9606] [51400] (30 PDB entries) |
Species Lactococcus lactis, isozyme A [TaxId:1358] [51398] (9 PDB entries) |
Species Lactococcus lactis, isozyme B [TaxId:1358] [51399] (3 PDB entries) PyrD subunit |
Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [141759] (1 PDB entry) Uniprot Q08210 158-566 homolog, mitochonrial |
Species Norway rat (Rattus norvegicus) [TaxId:10116] [102039] (2 PDB entries) |
Species Trypanosoma cruzi [TaxId:353153] [254868] (49 PDB entries) |
Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [141758] (1 PDB entry) Uniprot Q57U83 2-313 |
Dihydropyrimidine dehydrogenase, domain 4 [51410] (1 species) |
Species Pig (Sus scrofa) [TaxId:9823] [51411] (5 PDB entries) |
Flavocytochrome b2, C-terminal domain [51408] (1 species) |
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51409] (11 PDB entries) Uniprot P00175 N-terminal domain homologous to cytochrome b5 |
Glycolate oxidase [51404] (1 species) |
Species Spinach (Spinacia oleracea) [TaxId:3562] [51405] (4 PDB entries) |
Hydroxyacid oxidase [141761] (1 species) |
Species Norway rat (Rattus norvegicus) [TaxId:10116] [141762] (1 PDB entry) Uniprot Q07523 1-349 |
Isopentenyl-diphosphate delta-isomerase [89454] (3 species) |
Species Bacillus subtilis [TaxId:1423] [89455] (2 PDB entries) |
Species Thermus thermophilus HB8 [TaxId:300852] [159377] (1 PDB entry) |
Species Thermus thermophilus [TaxId:274] [141760] (1 PDB entry) Uniprot Q53W52 23-332 |
Membrane-associated (S)-mandelate dehydrogenase [63898] (1 species) |
Species Pseudomonas putida [TaxId:303] [63899] (3 PDB entries) |
Morphinone reductase [75053] (1 species) |
Species Pseudomonas putida [TaxId:303] [75054] (3 PDB entries) |
NADPH dehydrogenase NamA [141763] (1 species) OYE homolog |
Species Bacillus subtilis [TaxId:1423] [141764] (4 PDB entries) Uniprot P54550 1-337 probable NADH-dependent flavin oxidoreductase YqjM |
Old yellow enzyme (OYE) [51401] (2 species) |
Species Lager yeast (Saccharomyces pastorianus) [TaxId:27292] [51402] (18 PDB entries) |
Species Yeast (Candida albicans) [TaxId:5476] [51403] (2 PDB entries) |
PcrB protein homolog YerE [102046] (2 species) provisional classification; it is not known whether this protein binds FMN or not |
Species Bacillus subtilis [TaxId:1423] [102047] (5 PDB entries) |
Species Staphylococcus aureus [TaxId:418127] [194170] (2 PDB entries) |
Pentaerythritol tetranirate reductase [63900] (1 species) |
Species Enterobacter cloacae [TaxId:550] [63901] (27 PDB entries) Uniprot P71278 |
Putative flavin oxidoreducatase TM0096 [102044] (1 species) Dihydrouridine synthase (Dus) homologue; contains extra C-terminal alpha-helical domain |
Species Thermotoga maritima [TaxId:2336] [102045] (1 PDB entry) |
Trimethylamine dehydrogenase, N-terminal domain [51406] (1 species) two other domains are alpha/beta Rossmann-like fold and beta/beta/alpha fold |
Species Methylophilus methylotrophus, w3a1 [TaxId:17] [51407] (5 PDB entries) |
automated matches [190228] (15 species) not a true protein |
Species Geobacillus kaustophilus [TaxId:235909] [257133] (2 PDB entries) |
Species Human (Homo sapiens) [TaxId:9606] [187000] (8 PDB entries) |
Species Lactococcus lactis [TaxId:1358] [186992] (2 PDB entries) |
Species Leishmania braziliensis [TaxId:5660] [272759] (1 PDB entry) |
Species Leishmania donovani [TaxId:5661] [188354] (1 PDB entry) |
Species Leishmania major [TaxId:347515] [255968] (3 PDB entries) |
Species Leishmania major [TaxId:5664] [255853] (6 PDB entries) |
Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [256645] (8 PDB entries) |
Species Norway rat (Rattus norvegicus) [TaxId:10116] [195883] (2 PDB entries) |
Species Plasmodium falciparum [TaxId:36329] [189697] (5 PDB entries) |
Species Pseudomonas putida [TaxId:303] [225091] (4 PDB entries) |
Species Solanum lycopersicum [TaxId:4081] [187823] (5 PDB entries) |
Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [187180] (2 PDB entries) |
Species Thermus thermophilus [TaxId:274] [254915] (1 PDB entry) |
Species Trypanosoma cruzi [TaxId:5693] [187324] (7 PDB entries) |
Timeline for Family c.1.4.1: FMN-linked oxidoreductases: