SCOPe 2.08: Family c.94.1.0: automated matches

Lineage for Family c.94.1.0: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
Similar in architecture to the superfamily I but partly differs in topology
Family c.94.1.0: automated matches [191309] (1 protein)
not a true family

Protein:

automated matches [190039] (161 species)
not a true protein
1. Species Actinobacillus succinogenes [TaxId:339671] [267981] (1 PDB entry)
2. Species Actinomyces odontolyticus [TaxId:411466] [189886] (1 PDB entry)
3. Species Adineta vaga [TaxId:104782] [226596] (6 PDB entries)
4. Species Advenella mimigardefordensis [TaxId:1247726] [401671] (5 PDB entries)
5. Species Agrobacterium fabrum [TaxId:176299] [258501] (12 PDB entries)
6. Species Agrobacterium fabrum [TaxId:358] [326659] (1 PDB entry)
7. Species Agrobacterium radiobacter [TaxId:311403] [314972] (1 PDB entry)
8. Species Agrobacterium tumefaciens [TaxId:1183423] [343144] (1 PDB entry)
9. Species Agrobacterium tumefaciens [TaxId:1435057] [361667] (3 PDB entries)
10. Species Agrobacterium tumefaciens [TaxId:176299] [260526] (10 PDB entries)
11. Species Agrobacterium vitis [TaxId:311402] [346334] (1 PDB entry)
12. Species Alicyclobacillus acidocaldarius [TaxId:521098] [228890] (1 PDB entry)
13. Species Anaerococcus prevoti [TaxId:525919] [267972] (1 PDB entry)
14. Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [330847] (1 PDB entry)
15. Species Arthrobacter globiformis [TaxId:1665] [394373] (1 PDB entry)
16. Species Bacillus licheniformis [TaxId:279010] [260795] (1 PDB entry)
17. Species Bacillus megaterium [TaxId:1404] [238213] (5 PDB entries)
18. Species Bacillus subtilis [TaxId:1423] [187940] (8 PDB entries)
19. Species Bacillus subtilis [TaxId:224308] [194551] (7 PDB entries)
20. Species Bacillus subtilis [TaxId:535025] [189693] (7 PDB entries)
21. Species Bifidobacterium animalis [TaxId:580050] [267917] (4 PDB entries)
22. Species Bordetella bronchiseptica [TaxId:257310] [267969] (3 PDB entries)
23. Species Bordetella parapertussis [TaxId:519] [267871] (1 PDB entry)
24. Species Bordetella pertussis [TaxId:257313] [255972] (3 PDB entries)
25. Species Borrelia burgdorferi [TaxId:224326] [236221] (1 PDB entry)
26. Species Bradyrhizobium japonicum [TaxId:224911] [346335] (1 PDB entry)
27. Species Brucella abortus [TaxId:359391] [328149] (2 PDB entries)
28. Species Burkholderia ambifaria [TaxId:339670] [267965] (3 PDB entries)
29. Species Burkholderia cenocepacia [TaxId:216591] [257683] (1 PDB entry)
30. Species Burkholderia pseudomallei [TaxId:320372] [226389] (1 PDB entry)
31. Species Caldanaerobacter subterraneus [TaxId:273068] [271830] (1 PDB entry)
32. Species Caldanaerobius polysaccharolyticus [TaxId:44256] [311425] (2 PDB entries)
33. Species Campylobacter jejuni [TaxId:192222] [259851] (3 PDB entries)
34. Species Campylobacter jejuni [TaxId:195099] [311908] (7 PDB entries)
35. Species Campylobacter jejuni [TaxId:197] [255598] (1 PDB entry)
36. Species Chicken (Gallus gallus) [TaxId:9031] [255102] (1 PDB entry)
37. Species Chlamydia trachomatis [TaxId:813] [188892] (1 PDB entry)
38. Species Chlamydophila pneumoniae [TaxId:83558] [189367] (3 PDB entries)
39. Species Chromohalobacter salexigens [TaxId:290398] [267970] (3 PDB entries)
40. Species Citrobacter koseri [TaxId:290338] [267974] (2 PDB entries)
41. Species Clostridium botulinum [TaxId:441770] [256351] (1 PDB entry)
42. Species Clostridium difficile [TaxId:272563] [197037] (2 PDB entries)
43. Species Clostridium perfringens [TaxId:195103] [256247] (1 PDB entry)
44. Species Cow (Bos taurus) [TaxId:9913] [225036] (50 PDB entries)
45. Species Coxiella burnetii [TaxId:777] [189739] (2 PDB entries)
46. Species Cupriavidus necator [TaxId:381666] [257446] (1 PDB entry)
47. Species Desulfovibrio alaskensis [TaxId:207559] [267973] (2 PDB entries)
48. Species Desulfovibrio desulfuricans [TaxId:207559] [267990] (2 PDB entries)
49. Species Desulfovibrio desulfuricans [TaxId:525146] [267975] (1 PDB entry)
50. Species Desulfovibrio salexigens [TaxId:526222] [256368] (3 PDB entries)
51. Species Desulfovibrio vulgaris [TaxId:573059] [269191] (1 PDB entry)
52. Species Drosophila grimshawi [TaxId:7222] [324895] (1 PDB entry)
53. Species Ehrlichia chaffeensis [TaxId:205920] [226384] (1 PDB entry)
54. Species Enterococcus faecalis [TaxId:226185] [195543] (5 PDB entries)
55. Species Enterococcus faecium [TaxId:333849] [279906] (1 PDB entry)
56. Species Escherichia coli [TaxId:511145] [276996] (1 PDB entry)
57. Species Escherichia coli [TaxId:562] [189696] (1 PDB entry)
58. Species Escherichia coli [TaxId:83333] [271371] (5 PDB entries)
59. Species Escherichia fergusonii [TaxId:585054] [258714] (1 PDB entry)
60. Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [272003] (3 PDB entries)
61. Species Fusobacterium nucleatum [TaxId:190304] [257501] (2 PDB entries)
62. Species Geobacillus stearothermophilus [TaxId:1422] [225397] (10 PDB entries)
63. Species Geobacter sulfurreducens [TaxId:35554] [188938] (1 PDB entry)
64. Species Haemophilus influenzae [TaxId:656912] [257455] (1 PDB entry)
65. Species Haemophilus parasuis [TaxId:456298] [189829] (1 PDB entry)
66. Species Haemophilus parasuis [TaxId:557723] [193812] (1 PDB entry)
67. Species Halomonas elongata [TaxId:2746] [255854] (3 PDB entries)
68. Species Helicobacter pylori [TaxId:210] [373255] (1 PDB entry)
69. Species Human (Homo sapiens) [TaxId:9606] [193730] (34 PDB entries)
70. Species Lactobacillus brevis [TaxId:387344] [195626] (1 PDB entry)
71. Species Lactococcus lactis [TaxId:272623] [227880] (6 PDB entries)
72. Species Legionella pneumophila [TaxId:272624] [189169] (1 PDB entry)
73. Species Liberibacter asiaticus [TaxId:537021] [369512] (4 PDB entries)
74. Species Listeria innocua [TaxId:272626] [351713] (4 PDB entries)
75. Species Listeria monocytogenes [TaxId:169963] [193523] (5 PDB entries)
76. Species Marinobacter aquaeolei [TaxId:351348] [257503] (1 PDB entry)
77. Species Methanobacterium thermoautotrophicum [TaxId:187420] [225549] (1 PDB entry)
78. Species Methanosarcina acetivorans [TaxId:2214] [255905] (3 PDB entries)
79. Species Methanosarcina mazei [TaxId:2209] [340472] (1 PDB entry)
80. Species Mnemiopsis leidyi [TaxId:27923] [278472] (6 PDB entries)
81. Species Mycolicibacterium thermoresistibile [TaxId:1797] [402946] (1 PDB entry)
82. Species Neisseria gonorrhoeae [TaxId:242231] [255702] (1 PDB entry)
83. Species Neisseria gonorrhoeae [TaxId:485] [255703] (2 PDB entries)
84. Species Neisseria meningitidis [TaxId:122586] [311302] (1 PDB entry)
85. Species Neisseria meningitidis [TaxId:487] [232610] (4 PDB entries)
86. Species Neisseria meningitidis [TaxId:663926] [369753] (1 PDB entry)
87. Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (113 PDB entries)
88. Species Nostoc punctiforme [TaxId:63737] [188325] (1 PDB entry)
89. Species Ochrobactrum anthropi [TaxId:439375] [257422] (2 PDB entries)
90. Species Paenibacillus sp. [TaxId:762821] [420123] (1 PDB entry)
91. Species Pectobacterium atrosepticum [TaxId:218491] [268814] (1 PDB entry)
92. Species Pelagibacter ubique [TaxId:335992] [314766] (2 PDB entries)
93. Species Pleurobrachia bachei [TaxId:34499] [278487] (1 PDB entry)
94. Species Polaromonas sp. [TaxId:296591] [257484] (2 PDB entries)
95. Species Porphyromonas gingivalis [TaxId:837] [225908] (2 PDB entries)
96. Species Pseudomonas aeruginosa [TaxId:287] [195692] (5 PDB entries)
97. Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [196922] (8 PDB entries)
98. Species Pseudomonas putida [TaxId:231023] [269202] (1 PDB entry)
99. Species Pseudomonas sp. [TaxId:1882759] [402166] (2 PDB entries)
100. Species Pseudothermotoga lettingae [TaxId:416591] [275191] (1 PDB entry)
101. Species Psychrobacter arcticus [TaxId:259536] [338566] (12 PDB entries)
102. Species Pyrococcus horikoshii [TaxId:53953] [188797] (1 PDB entry)
103. Species Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:382] [188303] (2 PDB entries)
104. Species Rhizobium radiobacter [TaxId:358] [343165] (6 PDB entries)
105. Species Rhodobacter sphaeroides [TaxId:349101] [257489] (2 PDB entries)
106. Species Rhodoferax ferrireducens [TaxId:338969] [315085] (1 PDB entry)
107. Species Rhodopseudomonas palustris [TaxId:316058] [267982] (2 PDB entries)
108. Species Roseobacter denitrificans [TaxId:375451] [267986] (2 PDB entries)
109. Species Ruegeria pomeroyi [TaxId:246200] [267988] (3 PDB entries)
110. Species Ruminococcus gnavus [TaxId:411470] [194126] (1 PDB entry)
111. Species Salmonella enterica [TaxId:28901] [267925] (1 PDB entry)
112. Species Salmonella enterica [TaxId:90371] [256251] (2 PDB entries)
113. Species Salmonella typhimurium [TaxId:90371] [189953] (1 PDB entry)
114. Species Schizosaccharomyces pombe [TaxId:284812] [346336] (1 PDB entry)
115. Species Shewanella loihica [TaxId:323850] [267980] (2 PDB entries)
116. Species Shewanella oneidensis [TaxId:211586] [267968] (1 PDB entry)
117. Species Silicibacter pomeroyi [TaxId:246200] [267836] (1 PDB entry)
118. Species Silicibacter pomeroyi [TaxId:89184] [189007] (1 PDB entry)
119. Species Sphingobium chlorophenolicum [TaxId:46429] [261279] (3 PDB entries)
120. Species Staphylococcus aureus [TaxId:1280] [348799] (4 PDB entries)
121. Species Staphylococcus aureus [TaxId:158878] [189432] (1 PDB entry)
122. Species Staphylococcus aureus [TaxId:93061] [256289] (2 PDB entries)
123. Species Stenotrophomonas maltophilia [TaxId:391008] [317068] (1 PDB entry)
124. Species Stenotrophomonas maltophilia [TaxId:40324] [323625] (1 PDB entry)
125. Species Streptococcus mutans [TaxId:1309] [224911] (1 PDB entry)
126. Species Streptococcus pneumoniae [TaxId:170187] [226722] (3 PDB entries)
127. Species Streptococcus pneumoniae [TaxId:525381] [226370] (1 PDB entry)
128. Species Streptococcus pneumoniae [TaxId:637987] [193477] (7 PDB entries)
129. Species Streptococcus thermophilus [TaxId:264199] [232515] (1 PDB entry)
130. Species Streptomyces glaucescens [TaxId:1907] [255902] (4 PDB entries)
131. Species Sulfitobacter sp. [TaxId:314267] [267989] (3 PDB entries)
132. Species Sulfurospirillum deleyianum [TaxId:525898] [256378] (1 PDB entry)
133. Species Synechococcus sp. [TaxId:1131] [403976] (2 PDB entries)
134. Species Synechocystis sp. PCC 6803 [TaxId:1148] [187344] (3 PDB entries)
135. Species Synechocystis sp. [TaxId:1148] [225435] (2 PDB entries)
136. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [226598] (7 PDB entries)
137. Species Thermoactinomyces vulgaris [TaxId:2026] [193732] (5 PDB entries)
138. Species Thermoanaerobacter sp. [TaxId:573062] [396034] (1 PDB entry)
139. Species Thermotoga maritima [TaxId:2336] [267782] (1 PDB entry)
140. Species Thermotoga maritima [TaxId:243274] [187721] (11 PDB entries)
141. Species Thermus thermophilus HB8 [TaxId:300852] [226637] (8 PDB entries)
142. Species Thermus thermophilus [TaxId:262724] [193882] (6 PDB entries)
143. Species Thermus thermophilus [TaxId:300852] [420023] (34 PDB entries)
144. Species Treponema pallidum [TaxId:243276] [225334] (1 PDB entry)
145. Species Treponema vincentii [TaxId:69710] [366359] (1 PDB entry)
146. Species Trichodesmium erythraeum [TaxId:203124] [357359] (3 PDB entries)
147. Species Uncultured bacterium [TaxId:77133] [328538] (2 PDB entries)
148. Species Uncultured marine [TaxId:56765] [328526] (2 PDB entries)
149. Species Verminephrobacter eiseniae [TaxId:391735] [257451] (2 PDB entries)
150. Species Vibrio cholerae [TaxId:243277] [268805] (4 PDB entries)
151. Species Vibrio cholerae [TaxId:593588] [257929] (1 PDB entry)
152. Species Vibrio cholerae [TaxId:666] [328970] (4 PDB entries)
153. Species Vibrio harveyi [TaxId:673519] [348941] (10 PDB entries)
154. Species Vibrio parahaemolyticus [TaxId:670] [233133] (1 PDB entry)
155. Species Vibrio vulnificus [TaxId:672] [330964] (5 PDB entries)
156. Species Wolinella succinogenes [TaxId:844] [189100] (1 PDB entry)
157. Species Xanthobacter autotrophicus [TaxId:78245] [267987] (1 PDB entry)
158. Species Xanthomonas axonopodis [TaxId:190486] [225275] (3 PDB entries)
159. Species Xanthomonas axonopodis [TaxId:92829] [225663] (1 PDB entry)
160. Species Yersinia enterocolitica [TaxId:630] [231285] (4 PDB entries)
161. Species Pseudomonas aeruginosa [TaxId:1279007] [422862] (1 PDB entry)

More info for Family c.94.1.0: automated matches

Timeline for Family c.94.1.0: automated matches:

Family c.94.1.0: automated matches first appeared in SCOPe 2.01
Family c.94.1.0: automated matches appears in SCOPe 2.07