SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Agrobacterium fabrum [TaxId: 358]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (136 species)
    not a true protein
  7. 2283358Species Agrobacterium fabrum [TaxId:358] [326659] (1 PDB entry)

PDB entry in Species: Agrobacterium fabrum [TaxId: 358]:

More info for Species Agrobacterium fabrum [TaxId:358] from c.94.1.0 automated matches

Timeline for Species Agrobacterium fabrum [TaxId:358] from c.94.1.0 automated matches:

  • Species Agrobacterium fabrum [TaxId:358] from c.94.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-11-30