SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Brucella abortus [TaxId: 359391]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (136 species)
    not a true protein
  7. 2284848Species Brucella abortus [TaxId:359391] [328149] (2 PDB entries)

PDB entries in Species: Brucella abortus [TaxId: 359391]:

  1. Domain(s) for 5teu:
    1. 2284849Domain d5teub1: 5teu B:25-304 [328150]
      Other proteins in same PDB: d5teua2, d5teub2
      automated match to d4ne4a_
      complexed with act, so4, tla
    2. 2284860Domain d5teua1: 5teu A:25-304 [328161]
      Other proteins in same PDB: d5teua2, d5teub2
      automated match to d4ne4a_
      complexed with act, so4, tla
  2. Domain(s) for 5uve:
    1. 2287526Domain d5uvef1: 5uve F:26-303 [330827]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol
    2. 2287534Domain d5uvee1: 5uve E:26-304 [330835]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol
    3. 2287555Domain d5uveg1: 5uve G:26-303 [330856]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol
    4. 2287589Domain d5uved1: 5uve D:26-303 [330890]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol
    5. 2287611Domain d5uvea1: 5uve A:26-304 [330912]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol
    6. 2287618Domain d5uveh1: 5uve H:26-303 [330919]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol
    7. 2287622Domain d5uvec1: 5uve C:26-303 [330923]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol
    8. 2287631Domain d5uveb1: 5uve B:26-304 [330932]
      Other proteins in same PDB: d5uvea2, d5uveb2, d5uvec2, d5uved2, d5uvee2, d5uvef2, d5uveg2, d5uveh2
      automated match to d4ne4a_
      complexed with ca, gol

More info for Species Brucella abortus [TaxId:359391] from c.94.1.0 automated matches

Timeline for Species Brucella abortus [TaxId:359391] from c.94.1.0 automated matches:

  • Species Brucella abortus [TaxId:359391] from c.94.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-12