SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Uncultured marine [TaxId: 56765]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (134 species)
    not a true protein
  7. 2285225Species Uncultured marine [TaxId:56765] [328526] (2 PDB entries)

PDB entries in Species: Uncultured marine [TaxId: 56765]:

  1. Domain(s) for 5i5p:
    1. 2285226Domain d5i5pa1: 5i5p A:25-342 [328527]
      Other proteins in same PDB: d5i5pa2, d5i5pb2
      automated match to d5im2a_
      complexed with br, peg, phb
    2. 2285396Domain d5i5pb1: 5i5p B:25-342 [328697]
      Other proteins in same PDB: d5i5pa2, d5i5pb2
      automated match to d5im2a_
      complexed with br, peg, phb
  2. Domain(s) for 5i7i:
    1. 2285247Domain d5i7ia_: 5i7i A: [328548]
      Other proteins in same PDB: d5i7ib2
      automated match to d5im2a_
      complexed with 3hb, peg
    2. 2285263Domain d5i7ib1: 5i7i B:25-342 [328564]
      Other proteins in same PDB: d5i7ib2
      automated match to d5im2a_
      complexed with 3hb, peg

More info for Species Uncultured marine [TaxId:56765] from c.94.1.0 automated matches

Timeline for Species Uncultured marine [TaxId:56765] from c.94.1.0 automated matches:

  • Species Uncultured marine [TaxId:56765] from c.94.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-18