SCOP 1.71: Protein: 50S subunit

Lineage for Protein: 50S subunit

Root: SCOP 1.71
Class i: Low resolution protein structures [58117] (24 folds)
Fold i.1: Ribosome and ribosomal fragments [58118] (1 superfamily)
Superfamily i.1.1: Ribosome and ribosomal fragments [58119] (3 families)
Family i.1.1.2: Large subunit [58124] (3 proteins)
Protein 50S subunit [58125] (3 species)

Species:

Archaeon Haloarcula marismortui [TaxId:2238] [58126] (4 PDB entries)
1. Domains for 1c04:
  1. Domain d1c04a_: 1c04 A: [45827]
  2. Domain d1c04b_: 1c04 B: [45828]
  3. Domain d1c04c_: 1c04 C: [45829]
  4. Domain d1c04d_: 1c04 D: [45830]
  5. Domain d1c04e_: 1c04 E: [45831]
  6. Domain d1c04f_: 1c04 F: [45832]
2. Domain for 1ffz:
  - Domain d1ffza_: 1ffz A: [45834]
    complexed with r(CC)-dA-puromycin
3. Domain for 1fg0:
  - Domain d1fg0a_: 1fg0 A: [45833]
    complexed with a 13 bp minihelix- puromycin compound
4. Domains for 1w2b:
  1. Domain d1w2b1_: 1w2b 1: [109091]
  2. Domain d1w2b2_: 1w2b 2: [109092]
  3. Domain d1w2b5_: 1w2b 5: [109093]
  4. Domain d1w2ba_: 1w2b A: [109094]
  5. Domain d1w2bb_: 1w2b B: [109095]
  6. Domain d1w2bc_: 1w2b C: [109096]
  7. Domain d1w2bd_: 1w2b D: [109097]
  8. Domain d1w2be_: 1w2b E: [109098]
  9. Domain d1w2bf_: 1w2b F: [109099]
  10. Domain d1w2bg_: 1w2b G: [109100]
  11. Domain d1w2bh_: 1w2b H: [109101]
  12. Domain d1w2bi_: 1w2b I: [109102]
  13. Domain d1w2bj_: 1w2b J: [109103]
  14. Domain d1w2bk_: 1w2b K: [109104]
  15. Domain d1w2bl_: 1w2b L: [109105]
  16. Domain d1w2bm_: 1w2b M: [109106]
  17. Domain d1w2bn_: 1w2b N: [109107]
  18. Domain d1w2bo_: 1w2b O: [109108]
  19. Domain d1w2bp_: 1w2b P: [109109]
  20. Domain d1w2br_: 1w2b R: [109110]
  21. Domain d1w2bs_: 1w2b S: [109111]
  22. Domain d1w2bt_: 1w2b T: [109112]
  23. Domain d1w2bu_: 1w2b U: [109113]
  24. Domain d1w2bv_: 1w2b V: [109114]
  25. Domain d1w2bw_: 1w2b W: [109115]
  26. Domain d1w2bx_: 1w2b X: [109116]
  27. Domain d1w2by_: 1w2b Y: [109117]
  28. Domain d1w2bz_: 1w2b Z: [109118]
    50S subunit in complex with the trigger factor
Deinococcus radiodurans [TaxId:1299] [69993] (15 PDB entries)
1. Domains for 1j5a:
  1. Domain d1j5aa_: 1j5a A: [71536]
  2. Domain d1j5ak_: 1j5a K: [71537]
  3. Domain d1j5al_: 1j5a L: [71538]
  4. Domain d1j5am_: 1j5a M: [71539]
2. Domains for 1jzx:
  1. Domain d1jzxa_: 1jzx A: [67884]
  2. Domain d1jzxk_: 1jzx K: [67885]
  3. Domain d1jzxl_: 1jzx L: [67886]
  4. Domain d1jzxm_: 1jzx M: [67887]
3. Domains for 1jzy:
  1. Domain d1jzya_: 1jzy A: [67888]
  2. Domain d1jzyk_: 1jzy K: [67889]
  3. Domain d1jzyl_: 1jzy L: [67890]
  4. Domain d1jzym_: 1jzy M: [67891]
4. Domains for 1jzz:
  1. Domain d1jzza_: 1jzz A: [67892]
  2. Domain d1jzzk_: 1jzz K: [67893]
  3. Domain d1jzzl_: 1jzz L: [67894]
  4. Domain d1jzzm_: 1jzz M: [67895]
5. Domains for 1k01:
  1. Domain d1k01a_: 1k01 A: [67900]
  2. Domain d1k01k_: 1k01 K: [67901]
  3. Domain d1k01l_: 1k01 L: [67902]
  4. Domain d1k01m_: 1k01 M: [67903]
6. Domains for 1njm:
  1. Domain d1njm0_: 1njm 0: [80547]
  2. Domain d1njmk_: 1njm K: [80548]
  3. Domain d1njmt_: 1njm T: [80549]
    complexed with a tRNA acceptor stem mimic (asm) and the antibiotic sparsomycin
7. Domain for 1njn:
  - Domain d1njn0_: 1njn 0: [80550]
    complexed with the antibiotic sparsomycin
8. Domain for 1njo:
  - Domain d1njo0_: 1njo 0: [80551]
    complexed with a short substrate analog accpuromycin (accp)
9. Domains for 1njp:
  1. Domain d1njp0_: 1njp 0: [80552]
  2. Domain d1njpk_: 1njp K: [80553]
  3. Domain d1njpt_: 1njp T: [80554]
    complexed with a tRNA acceptor stem mimic (asm)
10. Domains for 1nkw:
  1. Domain d1nkw0_: 1nkw 0: [80580]
  2. Domain d1nkw1_: 1nkw 1: [80581]
  3. Domain d1nkw2_: 1nkw 2: [80582]
  4. Domain d1nkw3_: 1nkw 3: [80583]
  5. Domain d1nkw4_: 1nkw 4: [80584]
    CA-atoms only for the ribosomal protein structures
  6. Domain d1nkw9_: 1nkw 9: [80585]
  7. Domain d1nkwa_: 1nkw A: [80586]
  8. Domain d1nkwb_: 1nkw B: [80587]
  9. Domain d1nkwc_: 1nkw C: [80588]
  10. Domain d1nkwd_: 1nkw D: [80589]
  11. Domain d1nkwe_: 1nkw E: [80590]
  12. Domain d1nkwf_: 1nkw F: [80591]
  13. Domain d1nkwg_: 1nkw G: [80592]
  14. Domain d1nkwh_: 1nkw H: [80593]
  15. Domain d1nkwi_: 1nkw I: [80594]
  16. Domain d1nkwj_: 1nkw J: [80595]
  17. Domain d1nkwk_: 1nkw K: [80596]
  18. Domain d1nkwl_: 1nkw L: [80597]
  19. Domain d1nkwm_: 1nkw M: [80598]
  20. Domain d1nkwn_: 1nkw N: [80599]
  21. Domain d1nkwo_: 1nkw O: [80600]
  22. Domain d1nkwp_: 1nkw P: [80601]
  23. Domain d1nkwq_: 1nkw Q: [80602]
  24. Domain d1nkwr_: 1nkw R: [80603]
  25. Domain d1nkws_: 1nkw S: [80604]
  26. Domain d1nkwt_: 1nkw T: [80605]
  27. Domain d1nkwu_: 1nkw U: [80606]
  28. Domain d1nkww_: 1nkw W: [80607]
  29. Domain d1nkwx_: 1nkw X: [80608]
  30. Domain d1nkwy_: 1nkw Y: [80609]
  31. Domain d1nkwz_: 1nkw Z: [80610]
11. Domains for 1nwx:
  1. Domain d1nwx0_: 1nwx 0: [86308]
  2. Domain d1nwx1_: 1nwx 1: [86309]
  3. Domain d1nwx2_: 1nwx 2: [86310]
  4. Domain d1nwx3_: 1nwx 3: [86311]
  5. Domain d1nwx4_: 1nwx 4: [86312]
    CA-atoms only for the ribosomal protein structures
  6. Domain d1nwx9_: 1nwx 9: [86313]
  7. Domain d1nwxa_: 1nwx A: [86314]
  8. Domain d1nwxb_: 1nwx B: [86315]
  9. Domain d1nwxc_: 1nwx C: [86316]
  10. Domain d1nwxd_: 1nwx D: [86317]
  11. Domain d1nwxe_: 1nwx E: [86318]
  12. Domain d1nwxf_: 1nwx F: [86319]
  13. Domain d1nwxg_: 1nwx G: [86320]
  14. Domain d1nwxh_: 1nwx H: [86321]
  15. Domain d1nwxi_: 1nwx I: [86322]
  16. Domain d1nwxj_: 1nwx J: [86323]
  17. Domain d1nwxk_: 1nwx K: [86324]
  18. Domain d1nwxl_: 1nwx L: [86325]
  19. Domain d1nwxm_: 1nwx M: [86326]
  20. Domain d1nwxn_: 1nwx N: [86327]
  21. Domain d1nwxo_: 1nwx O: [86328]
  22. Domain d1nwxp_: 1nwx P: [86329]
  23. Domain d1nwxq_: 1nwx Q: [86330]
  24. Domain d1nwxr_: 1nwx R: [86331]
  25. Domain d1nwxs_: 1nwx S: [86332]
  26. Domain d1nwxt_: 1nwx T: [86333]
  27. Domain d1nwxu_: 1nwx U: [86334]
  28. Domain d1nwxw_: 1nwx W: [86335]
  29. Domain d1nwxx_: 1nwx X: [86336]
  30. Domain d1nwxy_: 1nwx Y: [86337]
  31. Domain d1nwxz_: 1nwx Z: [86338]
12. Domains for 1nwy:
  1. Domain d1nwy0_: 1nwy 0: [86339]
  2. Domain d1nwy1_: 1nwy 1: [86340]
  3. Domain d1nwy2_: 1nwy 2: [86341]
  4. Domain d1nwy3_: 1nwy 3: [86342]
  5. Domain d1nwy4_: 1nwy 4: [86343]
    CA-atoms only for the ribosomal protein structures
  6. Domain d1nwy9_: 1nwy 9: [86344]
  7. Domain d1nwya_: 1nwy A: [86345]
  8. Domain d1nwyb_: 1nwy B: [86346]
  9. Domain d1nwyc_: 1nwy C: [86347]
  10. Domain d1nwyd_: 1nwy D: [86348]
  11. Domain d1nwye_: 1nwy E: [86349]
  12. Domain d1nwyf_: 1nwy F: [86350]
  13. Domain d1nwyg_: 1nwy G: [86351]
  14. Domain d1nwyh_: 1nwy H: [86352]
  15. Domain d1nwyi_: 1nwy I: [86353]
  16. Domain d1nwyj_: 1nwy J: [86354]
  17. Domain d1nwyk_: 1nwy K: [86355]
  18. Domain d1nwyl_: 1nwy L: [86356]
  19. Domain d1nwym_: 1nwy M: [86357]
  20. Domain d1nwyn_: 1nwy N: [86358]
  21. Domain d1nwyo_: 1nwy O: [86359]
  22. Domain d1nwyp_: 1nwy P: [86360]
  23. Domain d1nwyq_: 1nwy Q: [86361]
  24. Domain d1nwyr_: 1nwy R: [86362]
  25. Domain d1nwys_: 1nwy S: [86363]
  26. Domain d1nwyt_: 1nwy T: [86364]
  27. Domain d1nwyu_: 1nwy U: [86365]
  28. Domain d1nwyw_: 1nwy W: [86366]
  29. Domain d1nwyx_: 1nwy X: [86367]
  30. Domain d1nwyy_: 1nwy Y: [86368]
  31. Domain d1nwyz_: 1nwy Z: [86369]
13. Domains for 1ond:
  1. Domain d1ond0_: 1ond 0: [87138]
  2. Domain d1ondq_: 1ond Q: [87139]
  3. Domain d1ondz_: 1ond Z: [87140]
    complexed with troleandomycin macrolide antibiotic
14. Domain for 1p9x:
  - Domain d1p9x0_: 1p9x 0: [94401]
    complexed with the telithromycin ketolide antibiotic
15. Domains for 1sm1:
  1. Domain d1sm11_: 1sm1 1: [105725]
  2. Domain d1sm12_: 1sm1 2: [105726]
  3. Domain d1sm13_: 1sm1 3: [105727]
  4. Domain d1sm14_: 1sm1 4: [105728]
  5. Domain d1sm1a_: 1sm1 A: [105729]
  6. Domain d1sm1b_: 1sm1 B: [105730]
  7. Domain d1sm1c_: 1sm1 C: [105731]
  8. Domain d1sm1d_: 1sm1 D: [105732]
  9. Domain d1sm1e_: 1sm1 E: [105733]
  10. Domain d1sm1f_: 1sm1 F: [105734]
  11. Domain d1sm1g_: 1sm1 G: [105735]
  12. Domain d1sm1h_: 1sm1 H: [105736]
  13. Domain d1sm1i_: 1sm1 I: [105737]
  14. Domain d1sm1j_: 1sm1 J: [105738]
  15. Domain d1sm1k_: 1sm1 K: [105739]
  16. Domain d1sm1l_: 1sm1 L: [105740]
  17. Domain d1sm1m_: 1sm1 M: [105741]
  18. Domain d1sm1n_: 1sm1 N: [105742]
  19. Domain d1sm1o_: 1sm1 O: [105743]
  20. Domain d1sm1p_: 1sm1 P: [105744]
  21. Domain d1sm1q_: 1sm1 Q: [105745]
  22. Domain d1sm1r_: 1sm1 R: [105746]
  23. Domain d1sm1s_: 1sm1 S: [105747]
  24. Domain d1sm1t_: 1sm1 T: [105748]
  25. Domain d1sm1u_: 1sm1 U: [105749]
  26. Domain d1sm1w_: 1sm1 W: [105750]
  27. Domain d1sm1x_: 1sm1 X: [105751]
  28. Domain d1sm1y_: 1sm1 Y: [105752]
  29. Domain d1sm1z_: 1sm1 Z: [105753]
Escherichia coli [TaxId:562] [58127] (1 PDB entry)
- Domains for 487d:
  1. Domain d487dh_: 487d H: [45835]
  2. Domain d487di_: 487d I: [45836]
  3. Domain d487dj_: 487d J: [45837]
  4. Domain d487dk_: 487d K: [45838]
  5. Domain d487dl_: 487d L: [45839]
  6. Domain d487dm_: 487d M: [45840]
  7. Domain d487dn_: 487d N: [45841]

More info for Protein 50S subunit from i.1.1.2: Large subunit

Timeline for Protein 50S subunit from i.1.1.2: Large subunit:

Protein 50S subunit from i.1.1.2: Large subunit first appeared (with stable ids) in SCOP 1.55
Protein 50S subunit from i.1.1.2: Large subunit appears in SCOP 1.69
Protein 50S subunit from i.1.1.2: Large subunit appears in SCOP 1.73
Protein 50S subunit from i.1.1.2: Large subunit appears in the current release, SCOPe 2.08, called Protein Prokaryotic (50S subunit) from i.1.1.2: Large subunit