Lineage for Protein: 50S subunit

  1. Root: SCOP 1.69
  2. 526321Class i: Low resolution protein structures [58117] (24 folds)
  3. 526322Fold i.1: Ribosome and ribosomal fragments [58118] (1 superfamily)
  4. 526323Superfamily i.1.1: Ribosome and ribosomal fragments [58119] (3 families) (S)
  5. 526851Family i.1.1.2: Large subunit [58124] (3 proteins)
  6. 526855Protein 50S subunit [58125] (3 species)

Species:

  1. 526856Archaeon Haloarcula marismortui [TaxId:2238] [58126] (4 PDB entries)
    1. Domains for 1c04:
      1. 526886Domain d1c04a_: 1c04 A: [45827]
      2. 526887Domain d1c04b_: 1c04 B: [45828]
      3. 526888Domain d1c04c_: 1c04 C: [45829]
      4. 526889Domain d1c04d_: 1c04 D: [45830]
      5. Domain d1c04e_: 1c04 E: [45831]
      6. Domain d1c04f_: 1c04 F: [45832]
    2. Domain for 1ffz:
    3. Domain for 1fg0:
      • Domain d1fg0a_: 1fg0 A: [45833]
        complexed with a 13 bp minihelix- puromycin compound
    4. Domains for 1w2b:
      1. 526857Domain d1w2b1_: 1w2b 1: [109091]
      2. 526858Domain d1w2b2_: 1w2b 2: [109092]
      3. 526859Domain d1w2b5_: 1w2b 5: [109093]
      4. 526860Domain d1w2ba_: 1w2b A: [109094]
      5. 526861Domain d1w2bb_: 1w2b B: [109095]
      6. 526862Domain d1w2bc_: 1w2b C: [109096]
      7. 526863Domain d1w2bd_: 1w2b D: [109097]
      8. 526864Domain d1w2be_: 1w2b E: [109098]
      9. 526865Domain d1w2bf_: 1w2b F: [109099]
      10. 526866Domain d1w2bg_: 1w2b G: [109100]
      11. 526867Domain d1w2bh_: 1w2b H: [109101]
      12. 526868Domain d1w2bi_: 1w2b I: [109102]
      13. 526869Domain d1w2bj_: 1w2b J: [109103]
      14. 526870Domain d1w2bk_: 1w2b K: [109104]
      15. 526871Domain d1w2bl_: 1w2b L: [109105]
      16. 526872Domain d1w2bm_: 1w2b M: [109106]
      17. 526873Domain d1w2bn_: 1w2b N: [109107]
      18. 526874Domain d1w2bo_: 1w2b O: [109108]
      19. 526875Domain d1w2bp_: 1w2b P: [109109]
      20. 526876Domain d1w2br_: 1w2b R: [109110]
      21. 526877Domain d1w2bs_: 1w2b S: [109111]
      22. 526878Domain d1w2bt_: 1w2b T: [109112]
      23. 526879Domain d1w2bu_: 1w2b U: [109113]
      24. 526880Domain d1w2bv_: 1w2b V: [109114]
      25. 526881Domain d1w2bw_: 1w2b W: [109115]
      26. 526882Domain d1w2bx_: 1w2b X: [109116]
      27. 526883Domain d1w2by_: 1w2b Y: [109117]
      28. 526884Domain d1w2bz_: 1w2b Z: [109118]
  2. 526893Deinococcus radiodurans [TaxId:1299] [69993] (15 PDB entries)
    1. Domains for 1j5a:
      1. Domain d1j5aa_: 1j5a A: [71536]
      2. 526929Domain d1j5ak_: 1j5a K: [71537]
      3. 526930Domain d1j5al_: 1j5a L: [71538]
      4. 526931Domain d1j5am_: 1j5a M: [71539]
    2. Domains for 1jzx:
      1. Domain d1jzxa_: 1jzx A: [67884]
      2. 526933Domain d1jzxk_: 1jzx K: [67885]
      3. 526934Domain d1jzxl_: 1jzx L: [67886]
      4. 526935Domain d1jzxm_: 1jzx M: [67887]
    3. Domains for 1jzy:
      1. Domain d1jzya_: 1jzy A: [67888]
      2. 526947Domain d1jzyk_: 1jzy K: [67889]
      3. 526948Domain d1jzyl_: 1jzy L: [67890]
      4. 526949Domain d1jzym_: 1jzy M: [67891]
    4. Domains for 1jzz:
      1. Domain d1jzza_: 1jzz A: [67892]
      2. 526937Domain d1jzzk_: 1jzz K: [67893]
      3. 526938Domain d1jzzl_: 1jzz L: [67894]
      4. 526939Domain d1jzzm_: 1jzz M: [67895]
    5. Domains for 1k01:
      1. Domain d1k01a_: 1k01 A: [67900]
      2. 526983Domain d1k01k_: 1k01 K: [67901]
      3. 526984Domain d1k01l_: 1k01 L: [67902]
      4. 526985Domain d1k01m_: 1k01 M: [67903]
    6. Domains for 1njm:
      1. Domain d1njm0_: 1njm 0: [80547]
      2. 526941Domain d1njmk_: 1njm K: [80548]
      3. 526942Domain d1njmt_: 1njm T: [80549]
        complexed with a tRNA acceptor stem mimic (asm) and the antibiotic sparsomycin
    7. Domain for 1njn:
    8. Domain for 1njo:
      • Domain d1njo0_: 1njo 0: [80551]
        complexed with a short substrate analog accpuromycin (accp)
    9. Domains for 1njp:
      1. Domain d1njp0_: 1njp 0: [80552]
      2. 526895Domain d1njpk_: 1njp K: [80553]
      3. 526896Domain d1njpt_: 1njp T: [80554]
        complexed with a tRNA acceptor stem mimic (asm)
    10. Domains for 1nkw:
      1. Domain d1nkw0_: 1nkw 0: [80580]
      2. 526898Domain d1nkw1_: 1nkw 1: [80581]
      3. 526899Domain d1nkw2_: 1nkw 2: [80582]
      4. 526900Domain d1nkw3_: 1nkw 3: [80583]
      5. 526901Domain d1nkw4_: 1nkw 4: [80584]
        CA-atoms only for the ribosomal protein structures
      6. Domain d1nkw9_: 1nkw 9: [80585]
      7. 526903Domain d1nkwa_: 1nkw A: [80586]
      8. 526904Domain d1nkwb_: 1nkw B: [80587]
      9. 526905Domain d1nkwc_: 1nkw C: [80588]
      10. 526906Domain d1nkwd_: 1nkw D: [80589]
      11. 526907Domain d1nkwe_: 1nkw E: [80590]
      12. 526908Domain d1nkwf_: 1nkw F: [80591]
      13. 526909Domain d1nkwg_: 1nkw G: [80592]
      14. 526910Domain d1nkwh_: 1nkw H: [80593]
      15. 526911Domain d1nkwi_: 1nkw I: [80594]
      16. 526912Domain d1nkwj_: 1nkw J: [80595]
      17. 526913Domain d1nkwk_: 1nkw K: [80596]
      18. 526914Domain d1nkwl_: 1nkw L: [80597]
      19. 526915Domain d1nkwm_: 1nkw M: [80598]
      20. 526916Domain d1nkwn_: 1nkw N: [80599]
      21. 526917Domain d1nkwo_: 1nkw O: [80600]
      22. 526918Domain d1nkwp_: 1nkw P: [80601]
      23. 526919Domain d1nkwq_: 1nkw Q: [80602]
      24. 526920Domain d1nkwr_: 1nkw R: [80603]
      25. 526921Domain d1nkws_: 1nkw S: [80604]
      26. 526922Domain d1nkwt_: 1nkw T: [80605]
      27. 526923Domain d1nkwu_: 1nkw U: [80606]
      28. 526924Domain d1nkww_: 1nkw W: [80607]
      29. 526925Domain d1nkwx_: 1nkw X: [80608]
      30. 526926Domain d1nkwy_: 1nkw Y: [80609]
      31. 526927Domain d1nkwz_: 1nkw Z: [80610]
    11. Domains for 1nwx:
      1. Domain d1nwx0_: 1nwx 0: [86308]
      2. 527016Domain d1nwx1_: 1nwx 1: [86309]
      3. 527017Domain d1nwx2_: 1nwx 2: [86310]
      4. 527018Domain d1nwx3_: 1nwx 3: [86311]
      5. 527019Domain d1nwx4_: 1nwx 4: [86312]
        CA-atoms only for the ribosomal protein structures
      6. Domain d1nwx9_: 1nwx 9: [86313]
      7. 527021Domain d1nwxa_: 1nwx A: [86314]
      8. 527022Domain d1nwxb_: 1nwx B: [86315]
      9. 527023Domain d1nwxc_: 1nwx C: [86316]
      10. 527024Domain d1nwxd_: 1nwx D: [86317]
      11. 527025Domain d1nwxe_: 1nwx E: [86318]
      12. 527026Domain d1nwxf_: 1nwx F: [86319]
      13. 527027Domain d1nwxg_: 1nwx G: [86320]
      14. 527028Domain d1nwxh_: 1nwx H: [86321]
      15. 527029Domain d1nwxi_: 1nwx I: [86322]
      16. 527030Domain d1nwxj_: 1nwx J: [86323]
      17. 527031Domain d1nwxk_: 1nwx K: [86324]
      18. 527032Domain d1nwxl_: 1nwx L: [86325]
      19. 527033Domain d1nwxm_: 1nwx M: [86326]
      20. 527034Domain d1nwxn_: 1nwx N: [86327]
      21. 527035Domain d1nwxo_: 1nwx O: [86328]
      22. 527036Domain d1nwxp_: 1nwx P: [86329]
      23. 527037Domain d1nwxq_: 1nwx Q: [86330]
      24. 527038Domain d1nwxr_: 1nwx R: [86331]
      25. 527039Domain d1nwxs_: 1nwx S: [86332]
      26. 527040Domain d1nwxt_: 1nwx T: [86333]
      27. 527041Domain d1nwxu_: 1nwx U: [86334]
      28. 527042Domain d1nwxw_: 1nwx W: [86335]
      29. 527043Domain d1nwxx_: 1nwx X: [86336]
      30. 527044Domain d1nwxy_: 1nwx Y: [86337]
      31. 527045Domain d1nwxz_: 1nwx Z: [86338]
    12. Domains for 1nwy:
      1. Domain d1nwy0_: 1nwy 0: [86339]
      2. 526951Domain d1nwy1_: 1nwy 1: [86340]
      3. 526952Domain d1nwy2_: 1nwy 2: [86341]
      4. 526953Domain d1nwy3_: 1nwy 3: [86342]
      5. 526954Domain d1nwy4_: 1nwy 4: [86343]
        CA-atoms only for the ribosomal protein structures
      6. Domain d1nwy9_: 1nwy 9: [86344]
      7. 526956Domain d1nwya_: 1nwy A: [86345]
      8. 526957Domain d1nwyb_: 1nwy B: [86346]
      9. 526958Domain d1nwyc_: 1nwy C: [86347]
      10. 526959Domain d1nwyd_: 1nwy D: [86348]
      11. 526960Domain d1nwye_: 1nwy E: [86349]
      12. 526961Domain d1nwyf_: 1nwy F: [86350]
      13. 526962Domain d1nwyg_: 1nwy G: [86351]
      14. 526963Domain d1nwyh_: 1nwy H: [86352]
      15. 526964Domain d1nwyi_: 1nwy I: [86353]
      16. 526965Domain d1nwyj_: 1nwy J: [86354]
      17. 526966Domain d1nwyk_: 1nwy K: [86355]
      18. 526967Domain d1nwyl_: 1nwy L: [86356]
      19. 526968Domain d1nwym_: 1nwy M: [86357]
      20. 526969Domain d1nwyn_: 1nwy N: [86358]
      21. 526970Domain d1nwyo_: 1nwy O: [86359]
      22. 526971Domain d1nwyp_: 1nwy P: [86360]
      23. 526972Domain d1nwyq_: 1nwy Q: [86361]
      24. 526973Domain d1nwyr_: 1nwy R: [86362]
      25. 526974Domain d1nwys_: 1nwy S: [86363]
      26. 526975Domain d1nwyt_: 1nwy T: [86364]
      27. 526976Domain d1nwyu_: 1nwy U: [86365]
      28. 526977Domain d1nwyw_: 1nwy W: [86366]
      29. 526978Domain d1nwyx_: 1nwy X: [86367]
      30. 526979Domain d1nwyy_: 1nwy Y: [86368]
      31. 526980Domain d1nwyz_: 1nwy Z: [86369]
    13. Domains for 1ond:
      1. Domain d1ond0_: 1ond 0: [87138]
      2. 526944Domain d1ondq_: 1ond Q: [87139]
      3. 526945Domain d1ondz_: 1ond Z: [87140]
        complexed with troleandomycin macrolide antibiotic
    14. Domain for 1p9x:
      • Domain d1p9x0_: 1p9x 0: [94401]
        complexed with the telithromycin ketolide antibiotic
    15. Domains for 1sm1:
      1. 526986Domain d1sm11_: 1sm1 1: [105725]
      2. 526987Domain d1sm12_: 1sm1 2: [105726]
      3. 526988Domain d1sm13_: 1sm1 3: [105727]
      4. 526989Domain d1sm14_: 1sm1 4: [105728]
      5. 526990Domain d1sm1a_: 1sm1 A: [105729]
      6. 526991Domain d1sm1b_: 1sm1 B: [105730]
      7. 526992Domain d1sm1c_: 1sm1 C: [105731]
      8. 526993Domain d1sm1d_: 1sm1 D: [105732]
      9. 526994Domain d1sm1e_: 1sm1 E: [105733]
      10. 526995Domain d1sm1f_: 1sm1 F: [105734]
      11. 526996Domain d1sm1g_: 1sm1 G: [105735]
      12. 526997Domain d1sm1h_: 1sm1 H: [105736]
      13. 526998Domain d1sm1i_: 1sm1 I: [105737]
      14. 526999Domain d1sm1j_: 1sm1 J: [105738]
      15. 527000Domain d1sm1k_: 1sm1 K: [105739]
      16. 527001Domain d1sm1l_: 1sm1 L: [105740]
      17. 527002Domain d1sm1m_: 1sm1 M: [105741]
      18. 527003Domain d1sm1n_: 1sm1 N: [105742]
      19. 527004Domain d1sm1o_: 1sm1 O: [105743]
      20. 527005Domain d1sm1p_: 1sm1 P: [105744]
      21. 527006Domain d1sm1q_: 1sm1 Q: [105745]
      22. 527007Domain d1sm1r_: 1sm1 R: [105746]
      23. 527008Domain d1sm1s_: 1sm1 S: [105747]
      24. 527009Domain d1sm1t_: 1sm1 T: [105748]
      25. 527010Domain d1sm1u_: 1sm1 U: [105749]
      26. 527011Domain d1sm1w_: 1sm1 W: [105750]
      27. 527012Domain d1sm1x_: 1sm1 X: [105751]
      28. 527013Domain d1sm1y_: 1sm1 Y: [105752]
      29. 527014Domain d1sm1z_: 1sm1 Z: [105753]
  3. 527048Escherichia coli [TaxId:562] [58127] (1 PDB entry)

More info for Protein 50S subunit from i.1.1.2: Large subunit

Timeline for Protein 50S subunit from i.1.1.2: Large subunit: