SCOP 1.69: Protein: Family B DNA polymerase

Lineage for Protein: Family B DNA polymerase

Root: SCOP 1.69
Class e: Multi-domain proteins (alpha and beta) [56572] (46 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.1: DNA polymerase I [56673] (3 proteins)
Protein Family B DNA polymerase [56680] (6 species)

Species:

Archaeon Desulfurococcus tok [TaxId:108142] [56684] (2 PDB entries)
1. Domain for 1d5a:
  - Domain d1d5aa2: 1d5a A:348-756 [43012]
    Other proteins in same PDB: d1d5aa1
2. Domain for 1qqc:
  - Domain d1qqca2: 1qqc A:348-756 [43013]
    Other proteins in same PDB: d1qqca1
Archaeon Pyrococcus kodakaraensis [TaxId:311400] [56685] (1 PDB entry)
- Domain for 1wns:
  - Domain d1wnsa2: 1wns A:348-758 [109438]
    Other proteins in same PDB: d1wnsa1
Archaeon Thermococcus gorgonarius [TaxId:71997] [56682] (1 PDB entry)
- Domain for 1tgo:
  - Domain d1tgoa2: 1tgo A:348-773 [43010]
    Other proteins in same PDB: d1tgoa1
Archaeon Thermococcus sp., 9on-7 [TaxId:35749] [56683] (1 PDB entry)
- Domain for 1qht:
  - Domain d1qhta2: 1qht A:348-750 [43011]
    Other proteins in same PDB: d1qhta1
Bacteriophage RB69 [TaxId:12353] [56681] (8 PDB entries)
1. Domain for 1clq:
  - Domain d1clqa2: 1clq A:376-903 [43006]
    Other proteins in same PDB: d1clqa1
2. Domain for 1ig9:
  - Domain d1ig9a2: 1ig9 A:376-901 [62368]
    Other proteins in same PDB: d1ig9a1
3. Domain for 1ih7:
  - Domain d1ih7a2: 1ih7 A:376-903 [62376]
    Other proteins in same PDB: d1ih7a1
4. Domains for 1q9x:
  1. Domain d1q9xa2: 1q9x A:376-903 [96329]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
  2. Domain d1q9xb2: 1q9x B:376-903 [96331]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
  3. Domain d1q9xc2: 1q9x C:376-903 [96333]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
  4. Domain d1q9xd2: 1q9x D:376-903 [96335]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
5. Domain for 1q9y:
  - Domain d1q9ya2: 1q9y A:376-902 [96337]
    Other proteins in same PDB: d1q9ya1
6. Domains for 1rv2:
  1. Domain d1rv2a2: 1rv2 A:376-902 [97905]
    Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
  2. Domain d1rv2b2: 1rv2 B:376-901 [97907]
    Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
  3. Domain d1rv2c2: 1rv2 C:376-898 [97909]
    Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
  4. Domain d1rv2d2: 1rv2 D:376-896 [97911]
    Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
7. Domains for 1waf:
  1. Domain d1wafa2: 1waf A:376-903 [43008]
    Other proteins in same PDB: d1wafa1, d1wafb1
  2. Domain d1wafb2: 1waf B:376-903 [43009]
    Other proteins in same PDB: d1wafa1, d1wafb1
8. Domain for 1waj:
  - Domain d1waj_2: 1waj 376-903 [43007]
    Other proteins in same PDB: d1waj_1
Escherichia coli [TaxId:562] [103399] (1 PDB entry)
- Domain for 1q8i:
  - Domain d1q8ia2: 1q8i A:390-783 [96209]
    Other proteins in same PDB: d1q8ia1

More info for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I

Timeline for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I:

Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I first appeared (with stable ids) in SCOP 1.55, called Protein T4-like DNA polymerase from e.8.1.1: DNA polymerase I
Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I appears in SCOP 1.67
Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I appears in SCOP 1.71
Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I appears in the current release, SCOPe 2.08