Lineage for Protein: Family B DNA polymerase

  1. Root: SCOP 1.67
  2. 423625Class e: Multi-domain proteins (alpha and beta) [56572] (40 folds)
  3. 424451Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 424452Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 424453Family e.8.1.1: DNA polymerase I [56673] (3 proteins)
  6. 424510Protein Family B DNA polymerase [56680] (6 species)

Species:

  1. 424511Archaeon Desulfurococcus tok [TaxId:108142] [56684] (2 PDB entries)
    1. Domain for 1d5a:
    2. Domain for 1qqc:
  2. 424514Archaeon Pyrococcus kodakaraensis [TaxId:311400] [56685] (1 PDB entry)
  3. 424516Archaeon Thermococcus gorgonarius [TaxId:71997] [56682] (1 PDB entry)
  4. 424518Archaeon Thermococcus sp., 9on-7 [TaxId:35749] [56683] (1 PDB entry)
  5. 424520Bacteriophage RB69 [TaxId:12353] [56681] (8 PDB entries)
    1. Domain for 1clq:
    2. Domain for 1ig9:
    3. Domain for 1ih7:
    4. Domains for 1q9x:
      1. 424532Domain d1q9xa2: 1q9x A:376-903 [96329]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      2. 424533Domain d1q9xb2: 1q9x B:376-903 [96331]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      3. 424534Domain d1q9xc2: 1q9x C:376-903 [96333]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      4. 424535Domain d1q9xd2: 1q9x D:376-903 [96335]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
        complexed with 3dr, ca, dgp, doc; mutant
    5. Domain for 1q9y:
    6. Domains for 1rv2:
      1. 424526Domain d1rv2a2: 1rv2 A:376-902 [97905]
        Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
      2. 424527Domain d1rv2b2: 1rv2 B:376-901 [97907]
        Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
      3. 424528Domain d1rv2c2: 1rv2 C:376-898 [97909]
        Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
      4. 424529Domain d1rv2d2: 1rv2 D:376-896 [97911]
        Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1
        complexed with 3dr; mutant
    7. Domains for 1waf:
      1. 424530Domain d1wafa2: 1waf A:376-903 [43008]
        Other proteins in same PDB: d1wafa1, d1wafb1
      2. 424531Domain d1wafb2: 1waf B:376-903 [43009]
        Other proteins in same PDB: d1wafa1, d1wafb1
        complexed with gmp
    8. Domain for 1waj:
  6. 424536Escherichia coli [TaxId:562] [103399] (1 PDB entry)

More info for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I

Timeline for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I: