SCOPe 2.03: Protein: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD

Lineage for Protein: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
Fold c.59: MurD-like peptide ligases, peptide-binding domain [53243] (1 superfamily)
3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest
Superfamily c.59.1: MurD-like peptide ligases, peptide-binding domain [53244] (2 families)
Family c.59.1.1: MurCDEF C-terminal domain [53245] (4 proteins)
Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53246] (1 species)

Species:

Escherichia coli [TaxId:562] [53247] (11 PDB entries)
1. Domain for 1e0d:
  - Domain d1e0da2: 1e0d A:298-437 [33956]
    Other proteins in same PDB: d1e0da1, d1e0da3
    complexed with so4
2. Domain for 1eeh:
  - Domain d1eeha2: 1eeh A:298-437 [33955]
    Other proteins in same PDB: d1eeha1, d1eeha3
    complexed with uma
3. Domain for 1uag:
  - Domain d1uaga2: 1uag A:298-437 [33954]
    Other proteins in same PDB: d1uaga1, d1uaga3
    complexed with so4, uma
4. Domain for 2jff:
  - Domain d2jffa2: 2jff A:298-437 [138304]
    Other proteins in same PDB: d2jffa1, d2jffa3
    automatically matched to d1e0da2
    complexed with lk2, so4
5. Domain for 2jfg:
  - Domain d2jfga2: 2jfg A:298-437 [138307]
    Other proteins in same PDB: d2jfga1, d2jfga3
    automatically matched to d1e0da2
    complexed with adp, so4, uma
6. Domain for 2jfh:
  - Domain d2jfha2: 2jfh A:298-437 [138310]
    Other proteins in same PDB: d2jfha1, d2jfha3
    automatically matched to d1e0da2
    complexed with lk1, so4
7. Domain for 2uag:
  - Domain d2uaga2: 2uag A:298-437 [33951]
    Other proteins in same PDB: d2uaga1, d2uaga3
    complexed with adp, mg, uma
8. Domain for 2uuo:
  - Domain d2uuoa2: 2uuo A:298-437 [152198]
    Other proteins in same PDB: d2uuoa1, d2uuoa3
    automatically matched to d1e0da2
    complexed with lk3, so4
9. Domain for 2uup:
  - Domain d2uupa2: 2uup A:298-437 [152201]
    Other proteins in same PDB: d2uupa1, d2uupa3
    automatically matched to d1e0da2
    complexed with lk4, so4
10. Domain for 3uag:
  - Domain d3uaga2: 3uag A:298-437 [33953]
    Other proteins in same PDB: d3uaga1, d3uaga3
    complexed with adp, epe, mn, uma
11. Domain for 4uag:
  - Domain d4uaga2: 4uag A:298-437 [33952]
    Other proteins in same PDB: d4uaga1, d4uaga3
    complexed with so4, uag, unx

More info for Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from c.59.1.1: MurCDEF C-terminal domain

Timeline for Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from c.59.1.1: MurCDEF C-terminal domain:

Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from c.59.1.1: MurCDEF C-terminal domain first appeared (with stable ids) in SCOP 1.55, called Protein MurD (UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase) from c.59.1.1: MurD/MurF C-terminal domain
Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from c.59.1.1: MurCDEF C-terminal domain appears in SCOPe 2.02
Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from c.59.1.1: MurCDEF C-terminal domain appears in SCOPe 2.04
Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from c.59.1.1: MurCDEF C-terminal domain appears in the current release, SCOPe 2.08