SCOPe 2.07: Protein: Envelope glycoprotein

Lineage for Protein: Envelope glycoprotein

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.18: E set domains [81296] (24 families)
"Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies
Family b.1.18.4: Class II viral fusion proteins C-terminal domain [81284] (3 proteins)
Protein Envelope glycoprotein [49213] (5 species)

Species:

Dengue virus type 2 [TaxId:11060] [89194] (10 PDB entries)
Uniprot P12823 281-675 # 99% sequence identity
1. Domains for 1oam:
  1. Domain d1oama2: 1oam A:298-394 [302814]
    Other proteins in same PDB: d1oama1, d1oamb1
    automated match to d1ok8a1
    complexed with bgl, nag
  2. Domain d1oamb2: 1oam B:298-394 [302816]
    Other proteins in same PDB: d1oama1, d1oamb1
    automated match to d1ok8a1
    complexed with bgl, nag
2. Domains for 1oan:
  1. Domain d1oana1: 1oan A:298-394 [86740]
    Other proteins in same PDB: d1oana2, d1oanb2
    complexed with na, nag
  2. Domain d1oanb1: 1oan B:298-394 [86742]
    Other proteins in same PDB: d1oana2, d1oanb2
    complexed with na, nag
3. Domain for 1ok8:
  - Domain d1ok8a1: 1ok8 A:298-394 [93236]
    Other proteins in same PDB: d1ok8a2
    complexed with cl, nag
4. Domains for 1oke:
  1. Domain d1okea1: 1oke A:298-394 [87054]
    Other proteins in same PDB: d1okea2, d1okeb2
    complexed with bog, nag
  2. Domain d1okeb1: 1oke B:298-394 [87056]
    Other proteins in same PDB: d1okea2, d1okeb2
    complexed with bog, nag
5. Domain for 1tg8:
  - Domain d1tg8a1: 1tg8 A:298-395 [106892]
    Other proteins in same PDB: d1tg8a2
    complexed with ndg
6. Domains for 1tge:
  1. Domain d1tgea1: 1tge A:298-395 [106894]
    Other proteins in same PDB: d1tgea2, d1tgeb2, d1tgec2
  2. Domain d1tgeb1: 1tge B:298-395 [106896]
    Other proteins in same PDB: d1tgea2, d1tgeb2, d1tgec2
  3. Domain d1tgec1: 1tge C:298-395 [106898]
    Other proteins in same PDB: d1tgea2, d1tgeb2, d1tgec2
7. Domains for 1thd:
  1. Domain d1thda1: 1thd A:298-395 [106910]
    Other proteins in same PDB: d1thda2, d1thdb2, d1thdc2
  2. Domain d1thdb1: 1thd B:298-395 [106912]
    Other proteins in same PDB: d1thda2, d1thdb2, d1thdc2
  3. Domain d1thdc1: 1thd C:298-395 [106914]
    Other proteins in same PDB: d1thda2, d1thdb2, d1thdc2
8. Domains for 2b6b:
  1. Domain d2b6ba1: 2b6b A:298-394 [127976]
    Other proteins in same PDB: d2b6ba2, d2b6bb2, d2b6bc2, d2b6bd1
    automatically matched to d1tg8a1
  2. Domain d2b6bb1: 2b6b B:298-394 [127978]
    Other proteins in same PDB: d2b6ba2, d2b6bb2, d2b6bc2, d2b6bd1
    automatically matched to d1tg8a1
  3. Domain d2b6bc1: 2b6b C:298-394 [127980]
    Other proteins in same PDB: d2b6ba2, d2b6bb2, d2b6bc2, d2b6bd1
    automatically matched to d1tg8a1
9. Domain for 2r29:
  - Domain d2r29a_: 2r29 A: [151533]
    Other proteins in same PDB: d2r29l1, d2r29l2
    automated match to d1tgea1
    protein/RNA complex
10. Domain for 2r69:
  - Domain d2r69a1: 2r69 A:298-394 [151601]
    Other proteins in same PDB: d2r69l1, d2r69l2
    automatically matched to d1tgea1
Japanese encephalitis virus [TaxId:11072] [101527] (1 PDB entry)
- Domain for 1pjw:
  - Domain d1pjwa_: 1pjw A: [94793]
    C-terminal domain only
Langat virus [TaxId:11085] [141022] (1 PDB entry)
Uniprot P29838 583-765
- Domain for 2gg1:
  - Domain d2gg1a1: 2gg1 A:303-395 [135119]
Tick-borne encephalitis virus [TaxId:11084] [49214] (2 PDB entries)
1. Domain for 1svb:
  - Domain d1svba1: 1svb A:303-395 [21814]
    Other proteins in same PDB: d1svba2
    complexed with nag
2. Domains for 1urz:
  1. Domain d1urza1: 1urz A:303-401 [99838]
    Other proteins in same PDB: d1urza2, d1urzb2, d1urzc2, d1urzd2, d1urze2, d1urzf2
  2. Domain d1urzb1: 1urz B:303-401 [99840]
    Other proteins in same PDB: d1urza2, d1urzb2, d1urzc2, d1urzd2, d1urze2, d1urzf2
  3. Domain d1urzc1: 1urz C:303-401 [99842]
    Other proteins in same PDB: d1urza2, d1urzb2, d1urzc2, d1urzd2, d1urze2, d1urzf2
  4. Domain d1urzd1: 1urz D:303-401 [99844]
    Other proteins in same PDB: d1urza2, d1urzb2, d1urzc2, d1urzd2, d1urze2, d1urzf2
  5. Domain d1urze1: 1urz E:303-401 [99846]
    Other proteins in same PDB: d1urza2, d1urzb2, d1urzc2, d1urzd2, d1urze2, d1urzf2
  6. Domain d1urzf1: 1urz F:303-401 [99848]
    Other proteins in same PDB: d1urza2, d1urzb2, d1urzc2, d1urzd2, d1urze2, d1urzf2
West Nile virus [TaxId:11082] [110056] (1 PDB entry)
Uniprot Q8JU42 586-696
- Domain for 1s6n:
  - Domain d1s6na_: 1s6n A: [105311]

More info for Protein Envelope glycoprotein from b.1.18.4: Class II viral fusion proteins C-terminal domain

Timeline for Protein Envelope glycoprotein from b.1.18.4: Class II viral fusion proteins C-terminal domain:

Protein Envelope glycoprotein from b.1.18.4: Class II viral fusion proteins C-terminal domain first appeared (with stable ids) in SCOP 1.55, called Protein Envelope glycoprotein, domain III (C-terminal) from b.1.1.5: E set domains
Protein Envelope glycoprotein from b.1.18.4: Class II viral fusion proteins C-terminal domain appears in SCOPe 2.06
Protein Envelope glycoprotein from b.1.18.4: Class II viral fusion proteins C-terminal domain appears in the current release, SCOPe 2.08