SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families)

each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures

Family d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain [55094] (3 proteins)
C-terminal domain is all-alpha
Protein automated matches [315351] (2 species)
not a true protein

Species:

Methanothermobacter marburgensis [TaxId:145263] [315352] (2 PDB entries)
1. Domains for 5a0y:
  1. Domain d5a0ya1: 5a0y A:2-269 [317177]
    Other proteins in same PDB: d5a0ya2, d5a0yb2, d5a0yc_, d5a0yd2, d5a0ye2, d5a0yf_
    automated match to d1hbna2
    complexed with cl, com, f43, k, mg, na, tp7
  2. Domain d5a0yb1: 5a0y B:2-188 [317247]
    Other proteins in same PDB: d5a0ya2, d5a0yb2, d5a0yc_, d5a0yd2, d5a0ye2, d5a0yf_
    automated match to d1hbnb2
    complexed with cl, com, f43, k, mg, na, tp7
  3. Domain d5a0yd1: 5a0y D:2-269 [317206]
    Other proteins in same PDB: d5a0ya2, d5a0yb2, d5a0yc_, d5a0yd2, d5a0ye2, d5a0yf_
    automated match to d1hbna2
    complexed with cl, com, f43, k, mg, na, tp7
  4. Domain d5a0ye1: 5a0y E:2-188 [317224]
    Other proteins in same PDB: d5a0ya2, d5a0yb2, d5a0yc_, d5a0yd2, d5a0ye2, d5a0yf_
    automated match to d1hbnb2
    complexed with cl, com, f43, k, mg, na, tp7
2. Domains for 5g0r:
  1. Domain d5g0ra1: 5g0r A:2-269 [315386]
    Other proteins in same PDB: d5g0ra2, d5g0rb2, d5g0rc_, d5g0rd2, d5g0re2, d5g0rf_
    automated match to d1hbna2
    complexed with cl, f43, k, mg, na, tp7
  2. Domain d5g0rb1: 5g0r B:2-188 [315365]
    Other proteins in same PDB: d5g0ra2, d5g0rb2, d5g0rc_, d5g0rd2, d5g0re2, d5g0rf_
    automated match to d1hbnb2
    complexed with cl, f43, k, mg, na, tp7
  3. Domain d5g0rd1: 5g0r D:2-269 [315455]
    Other proteins in same PDB: d5g0ra2, d5g0rb2, d5g0rc_, d5g0rd2, d5g0re2, d5g0rf_
    automated match to d1hbna2
    complexed with cl, f43, k, mg, na, tp7
  4. Domain d5g0re1: 5g0r E:2-188 [315353]
    Other proteins in same PDB: d5g0ra2, d5g0rb2, d5g0rc_, d5g0rd2, d5g0re2, d5g0rf_
    automated match to d1hbnb2
    complexed with cl, f43, k, mg, na, tp7
Methanothermobacter wolfeii [TaxId:145261] [320248] (1 PDB entry)
- Domains for 5a8k:
  1. Domain d5a8ka1: 5a8k A:2-269 [320309]
    Other proteins in same PDB: d5a8ka2, d5a8kb2, d5a8kc_, d5a8kd2, d5a8ke2, d5a8kf_
    automated match to d1hbna2
    complexed with ca, com, etx, f43, k, mg, tp7
  2. Domain d5a8kb1: 5a8k B:2-188 [320249]
    Other proteins in same PDB: d5a8ka2, d5a8kb2, d5a8kc_, d5a8kd2, d5a8ke2, d5a8kf_
    automated match to d1hbnb2
    complexed with ca, com, etx, f43, k, mg, tp7
  3. Domain d5a8kd1: 5a8k D:2-269 [320318]
    Other proteins in same PDB: d5a8ka2, d5a8kb2, d5a8kc_, d5a8kd2, d5a8ke2, d5a8kf_
    automated match to d1hbna2
    complexed with ca, com, etx, f43, k, mg, tp7
  4. Domain d5a8ke1: 5a8k E:2-188 [320384]
    Other proteins in same PDB: d5a8ka2, d5a8kb2, d5a8kc_, d5a8kd2, d5a8ke2, d5a8kf_
    automated match to d1hbnb2
    complexed with ca, com, etx, f43, k, mg, tp7

More info for Protein automated matches from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain

Timeline for Protein automated matches from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain:

Protein automated matches from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain first appeared in SCOPe 2.06
Protein automated matches from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in the current release, SCOPe 2.08