SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.12: Purple acid phosphatase, N-terminal domain [49363] (2 families)
Family b.1.12.0: automated matches [227279] (1 protein)
not a true family
Protein automated matches [227090] (1 species)
not a true protein

Species:

French bean (Phaseolus vulgaris) [TaxId:3885] [226471] (12 PDB entries)

Domains for 2qfp:
1. Domain d2qfpa1: 2qfp A:9-120 [150742]
  Other proteins in same PDB: d2qfpa2, d2qfpb2, d2qfpc2, d2qfpd2
  automated match to d2qfra1
  complexed with f, fe, na, nag, ndg, so4, zn
2. Domain d2qfpb1: 2qfp B:9-120 [150744]
  Other proteins in same PDB: d2qfpa2, d2qfpb2, d2qfpc2, d2qfpd2
  automated match to d2qfra1
  complexed with f, fe, na, nag, ndg, so4, zn
3. Domain d2qfpc1: 2qfp C:9-120 [150746]
  Other proteins in same PDB: d2qfpa2, d2qfpb2, d2qfpc2, d2qfpd2
  automated match to d2qfra1
  complexed with f, fe, na, nag, ndg, so4, zn
4. Domain d2qfpd1: 2qfp D:9-120 [150748]
  Other proteins in same PDB: d2qfpa2, d2qfpb2, d2qfpc2, d2qfpd2
  automated match to d2qfra1
  complexed with f, fe, na, nag, ndg, so4, zn
Domains for 2qfr:
1. Domain d2qfra1: 2qfr A:9-120 [150750]
  Other proteins in same PDB: d2qfra2, d2qfrb2
  automated match to d2qfra1
  complexed with fe, nag, ndg, so4, zn
2. Domain d2qfrb1: 2qfr B:9-120 [150752]
  Other proteins in same PDB: d2qfra2, d2qfrb2
  automated match to d2qfra1
  complexed with fe, nag, ndg, so4, zn
Domains for 4dhl:
1. Domain d4dhla1: 4dhl A:8-120 [219759]
  Other proteins in same PDB: d4dhla2, d4dhlb2, d4dhlc2, d4dhld2
  automated match to d2qfra1
  complexed with 0k7, edo, fe, gol, nag, so4, zn
2. Domain d4dhlb1: 4dhl B:8-120 [219761]
  Other proteins in same PDB: d4dhla2, d4dhlb2, d4dhlc2, d4dhld2
  automated match to d2qfra1
  complexed with 0k7, edo, fe, gol, nag, so4, zn
3. Domain d4dhlc1: 4dhl C:7-120 [219763]
  Other proteins in same PDB: d4dhla2, d4dhlb2, d4dhlc2, d4dhld2
  automated match to d2qfra1
  complexed with 0k7, edo, fe, gol, nag, so4, zn
4. Domain d4dhld1: 4dhl D:8-120 [219765]
  Other proteins in same PDB: d4dhla2, d4dhlb2, d4dhlc2, d4dhld2
  automated match to d2qfra1
  complexed with 0k7, edo, fe, gol, nag, so4, zn
Domains for 4dsy:
1. Domain d4dsya1: 4dsy A:7-120 [220002]
  Other proteins in same PDB: d4dsya2, d4dsyb2, d4dsyc2, d4dsyd2
  automated match to d2qfra1
  complexed with 0lo, act, edo, fe, gol, nag, so4, zn
2. Domain d4dsyb1: 4dsy B:7-120 [220004]
  Other proteins in same PDB: d4dsya2, d4dsyb2, d4dsyc2, d4dsyd2
  automated match to d2qfra1
  complexed with 0lo, act, edo, fe, gol, nag, so4, zn
3. Domain d4dsyc1: 4dsy C:8-120 [220006]
  Other proteins in same PDB: d4dsya2, d4dsyb2, d4dsyc2, d4dsyd2
  automated match to d2qfra1
  complexed with 0lo, act, edo, fe, gol, nag, so4, zn
4. Domain d4dsyd1: 4dsy D:7-120 [220008]
  Other proteins in same PDB: d4dsya2, d4dsyb2, d4dsyc2, d4dsyd2
  automated match to d2qfra1
  complexed with 0lo, act, edo, fe, gol, nag, so4, zn
Domains for 4dt2:
1. Domain d4dt2a1: 4dt2 A:7-120 [220010]
  Other proteins in same PDB: d4dt2a2, d4dt2b2, d4dt2c2, d4dt2d2
  automated match to d2qfra1
  complexed with 0lv, act, edo, fe, gol, nag, so4, zn
2. Domain d4dt2b1: 4dt2 B:7-120 [220012]
  Other proteins in same PDB: d4dt2a2, d4dt2b2, d4dt2c2, d4dt2d2
  automated match to d2qfra1
  complexed with 0lv, act, edo, fe, gol, nag, so4, zn
3. Domain d4dt2c1: 4dt2 C:7-120 [220014]
  Other proteins in same PDB: d4dt2a2, d4dt2b2, d4dt2c2, d4dt2d2
  automated match to d2qfra1
  complexed with 0lv, act, edo, fe, gol, nag, so4, zn
4. Domain d4dt2d1: 4dt2 D:7-120 [220016]
  Other proteins in same PDB: d4dt2a2, d4dt2b2, d4dt2c2, d4dt2d2
  automated match to d2qfra1
  complexed with 0lv, act, edo, fe, gol, nag, so4, zn
Domains for 4kkz:
1. Domain d4kkza1: 4kkz A:8-120 [256866]
  Other proteins in same PDB: d4kkza2, d4kkzb2, d4kkzc2, d4kkzd2
  automated match to d1kbpa1
  complexed with 1rf, act, edo, fe, gol, na, nag, pge, so4, zn
2. Domain d4kkzb1: 4kkz B:8-120 [256864]
  Other proteins in same PDB: d4kkza2, d4kkzb2, d4kkzc2, d4kkzd2
  automated match to d1kbpa1
  complexed with 1rf, act, edo, fe, gol, na, nag, pge, so4, zn
3. Domain d4kkzc1: 4kkz C:8-120 [262825]
  Other proteins in same PDB: d4kkza2, d4kkzb2, d4kkzc2, d4kkzd2
  automated match to d1kbpa1
  complexed with 1rf, act, edo, fe, gol, na, nag, pge, so4, zn
4. Domain d4kkzd1: 4kkz D:7-120 [262827]
  Other proteins in same PDB: d4kkza2, d4kkzb2, d4kkzc2, d4kkzd2
  automated match to d1kbpa1
  complexed with 1rf, act, edo, fe, gol, na, nag, pge, so4, zn
Domains for 6g46:
1. Domain d6g46a1: 6g46 A:8-120 [358164]
  Other proteins in same PDB: d6g46a2, d6g46b2, d6g46c2, d6g46d2
  automated match to d1kbpa1
  complexed with edo, elh, fe, fuc, gol, ipa, na, nag, so4, zn
2. Domain d6g46b1: 6g46 B:8-120 [358101]
  Other proteins in same PDB: d6g46a2, d6g46b2, d6g46c2, d6g46d2
  automated match to d1kbpa1
  complexed with edo, elh, fe, fuc, gol, ipa, na, nag, so4, zn
3. Domain d6g46c1: 6g46 C:7-120 [358156]
  Other proteins in same PDB: d6g46a2, d6g46b2, d6g46c2, d6g46d2
  automated match to d1kbpa1
  complexed with edo, elh, fe, fuc, gol, ipa, na, nag, so4, zn
4. Domain d6g46d1: 6g46 D:8-120 [358059]
  Other proteins in same PDB: d6g46a2, d6g46b2, d6g46c2, d6g46d2
  automated match to d1kbpa1
  complexed with edo, elh, fe, fuc, gol, ipa, na, nag, so4, zn

Domains for 6hwr:

Domain d6hwra1: 6hwr A:7-120 [367127]
Other proteins in same PDB: d6hwra2, d6hwrb2, d6hwrc2, d6hwrd2
automated match to d1kbpa1
complexed with edo, fe, fuc, gol, h1q, h1t, h1w, ipa, na, nag, pge, so4, vn3, vv6, zn

Domain d6hwrb1: 6hwr B:8-120 [367100]
Other proteins in same PDB: d6hwra2, d6hwrb2, d6hwrc2, d6hwrd2
automated match to d1kbpa1
complexed with edo, fe, fuc, gol, h1q, h1t, h1w, ipa, na, nag, pge, so4, vn3, vv6, zn

Domain d6hwrc1: 6hwr C:9-120 [367111]
Other proteins in same PDB: d6hwra2, d6hwrb2, d6hwrc2, d6hwrd2
automated match to d1kbpa1
complexed with edo, fe, fuc, gol, h1q, h1t, h1w, ipa, na, nag, pge, so4, vn3, vv6, zn

Domain d6hwrd1: 6hwr D:7-120 [367179]
Other proteins in same PDB: d6hwra2, d6hwrb2, d6hwrc2, d6hwrd2
automated match to d1kbpa1
complexed with edo, fe, fuc, gol, h1q, h1t, h1w, ipa, na, nag, pge, so4, vn3, vv6, zn

Domains for 6of5:
1. Domain d6of5a1: 6of5 A:8-120 [373755]
  Other proteins in same PDB: d6of5a2, d6of5b2, d6of5c2, d6of5d2
  automated match to d1kbpa1
  complexed with bma, edo, fe, fuc, gol, man, mfj, na, nag, pge, so4, zn
2. Domain d6of5b1: 6of5 B:8-120 [373753]
  Other proteins in same PDB: d6of5a2, d6of5b2, d6of5c2, d6of5d2
  automated match to d1kbpa1
  complexed with bma, edo, fe, fuc, gol, man, mfj, na, nag, pge, so4, zn
3. Domain d6of5c1: 6of5 C:8-120 [373760]
  Other proteins in same PDB: d6of5a2, d6of5b2, d6of5c2, d6of5d2
  automated match to d1kbpa1
  complexed with bma, edo, fe, fuc, gol, man, mfj, na, nag, pge, so4, zn
4. Domain d6of5d1: 6of5 D:9-120 [373797]
  Other proteins in same PDB: d6of5a2, d6of5b2, d6of5c2, d6of5d2
  automated match to d1kbpa1
  complexed with bma, edo, fe, fuc, gol, man, mfj, na, nag, pge, so4, zn

Domains for 6ofd:

Domain d6ofda1: 6ofd A:6-120 [373644]
Other proteins in same PDB: d6ofda2, d6ofdb2, d6ofdc2, d6ofdd2
automated match to d1kbpa1
complexed with bma, cl, edo, fe, fuc, gol, man, mf1, na, nag, pge, so4, zn

Domain d6ofdb1: 6ofd B:8-120 [373714]
Other proteins in same PDB: d6ofda2, d6ofdb2, d6ofdc2, d6ofdd2
automated match to d1kbpa1
complexed with bma, cl, edo, fe, fuc, gol, man, mf1, na, nag, pge, so4, zn

Domain d6ofdc1: 6ofd C:8-120 [373641]
Other proteins in same PDB: d6ofda2, d6ofdb2, d6ofdc2, d6ofdd2
automated match to d1kbpa1
complexed with bma, cl, edo, fe, fuc, gol, man, mf1, na, nag, pge, so4, zn

Domain d6ofdd1: 6ofd D:8-120 [373700]
Other proteins in same PDB: d6ofda2, d6ofdb2, d6ofdc2, d6ofdd2
automated match to d1kbpa1
complexed with bma, cl, edo, fe, fuc, gol, man, mf1, na, nag, pge, so4, zn

Domains for 6py9:

Domain d6py9a1: 6py9 A:8-120 [384730]
Other proteins in same PDB: d6py9a2, d6py9b2, d6py9c2, d6py9d2
automated match to d1kbpa1
complexed with act, ad9, edo, fe, flc, fuc, gol, ipa, na, nag, p4j, pge, so4, zn

Domain d6py9b1: 6py9 B:8-120 [384818]
Other proteins in same PDB: d6py9a2, d6py9b2, d6py9c2, d6py9d2
automated match to d1kbpa1
complexed with act, ad9, edo, fe, flc, fuc, gol, ipa, na, nag, p4j, pge, so4, zn

Domain d6py9c1: 6py9 C:8-120 [384883]
Other proteins in same PDB: d6py9a2, d6py9b2, d6py9c2, d6py9d2
automated match to d1kbpa1
complexed with act, ad9, edo, fe, flc, fuc, gol, ipa, na, nag, p4j, pge, so4, zn

Domain d6py9d1: 6py9 D:8-120 [384813]
Other proteins in same PDB: d6py9a2, d6py9b2, d6py9c2, d6py9d2
automated match to d1kbpa1
complexed with act, ad9, edo, fe, flc, fuc, gol, ipa, na, nag, p4j, pge, so4, zn

Domains for 6vj7:

Domain d6vj7a1: 6vj7 A:8-120 [384879]
Other proteins in same PDB: d6vj7a2, d6vj7b2, d6vj7c2, d6vj7d2
automated match to d1kbpa1
complexed with anp, bma, edo, fe, fuc, gol, ipa, na, nag, pg4, pge, so4, zn

Domain d6vj7b1: 6vj7 B:8-120 [384857]
Other proteins in same PDB: d6vj7a2, d6vj7b2, d6vj7c2, d6vj7d2
automated match to d1kbpa1
complexed with anp, bma, edo, fe, fuc, gol, ipa, na, nag, pg4, pge, so4, zn

Domain d6vj7c1: 6vj7 C:8-120 [384855]
Other proteins in same PDB: d6vj7a2, d6vj7b2, d6vj7c2, d6vj7d2
automated match to d1kbpa1
complexed with anp, bma, edo, fe, fuc, gol, ipa, na, nag, pg4, pge, so4, zn

Domain d6vj7d1: 6vj7 D:7-120 [384860]
Other proteins in same PDB: d6vj7a2, d6vj7b2, d6vj7c2, d6vj7d2
automated match to d1kbpa1
complexed with anp, bma, edo, fe, fuc, gol, ipa, na, nag, pg4, pge, so4, zn

More info for Protein automated matches from b.1.12.0: automated matches

Timeline for Protein automated matches from b.1.12.0: automated matches:

Protein automated matches from b.1.12.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from b.1.12.0: automated matches appears in SCOPe 2.06
Protein automated matches from b.1.12.0: automated matches appears in the current release, SCOPe 2.08