SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class b: All beta proteins [48724] (174 folds)
Fold b.38: Sm-like fold [50181] (5 superfamilies)
core: barrel, open; n*=4, S*=8; meander; SH3-like topology
Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families)
Family b.38.1.0: automated matches [191538] (1 protein)
not a true family
Protein automated matches [190914] (7 species)
not a true protein

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [224863] (1 PDB entry)
- Domains for 4f7u:
  1. Domain d4f7uf_: 4f7u F: [221066]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3s6nf_
    complexed with p6g
  2. Domain d4f7ui_: 4f7u I: [221068]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3s6nf_
    complexed with p6g
Bacillus subtilis [TaxId:1423] [189371] (2 PDB entries)
1. Domains for 3ahu:
  1. Domain d3ahua_: 3ahu A: [198870]
    automated match to d3hsbd_
    protein/RNA complex
  2. Domain d3ahub_: 3ahu B: [198871]
    automated match to d3hsbd_
    protein/RNA complex
  3. Domain d3ahuc_: 3ahu C: [193699]
    automated match to d3hsbd_
    protein/RNA complex
2. Domain for 3hsb:
  - Domain d3hsbd_: 3hsb D: [177805]
    automated match to d1kq1h_
    protein/RNA complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188389] (4 PDB entries)
1. Domains for 3bw1:
  1. Domain d3bw1a_: 3bw1 A: [172872]
    automated match to d1i81d_
    complexed with mpd, so4
  2. Domain d3bw1b_: 3bw1 B: [172873]
    automated match to d1i81d_
    complexed with mpd, so4
2. Domains for 4c92:
  1. Domain d4c92c_: 4c92 C: [228296]
    automated match to d3bw1a_
    protein/RNA complex
  2. Domain d4c92d_: 4c92 D: [234294]
    automated match to d4m78n_
    protein/RNA complex
  3. Domain d4c92e_: 4c92 E: [228295]
    automated match to d3swna_
    protein/RNA complex
  4. Domain d4c92f_: 4c92 F: [228294]
    automated match to d3swnb_
    protein/RNA complex
3. Domains for 4m75:
  1. Domain d4m75d_: 4m75 D: [235535]
    automated match to d4c92f_
    protein/RNA complex; complexed with cl
  2. Domain d4m75e_: 4m75 E: [235536]
    automated match to d4c92e_
    protein/RNA complex; complexed with cl
  3. Domain d4m75k_: 4m75 K: [235537]
    automated match to d4c92f_
    protein/RNA complex; complexed with cl
  4. Domain d4m75l_: 4m75 L: [235539]
    automated match to d4c92e_
    protein/RNA complex; complexed with cl
4. Domains for 4m78:
  1. Domain d4m78d_: 4m78 D: [229669]
    automated match to d4c92f_
    protein/RNA complex
  2. Domain d4m78e_: 4m78 E: [229670]
    automated match to d4c92e_
    protein/RNA complex
  3. Domain d4m78k_: 4m78 K: [229674]
    automated match to d4c92f_
    protein/RNA complex
  4. Domain d4m78l_: 4m78 L: [229672]
    automated match to d4c92e_
    protein/RNA complex
Human (Homo sapiens) [TaxId:9606] [196227] (1 PDB entry)
- Domains for 3s6n:
  1. Domain d3s6nf_: 3s6n F: [196228]
    Other proteins in same PDB: d3s6na_, d3s6nb_
    automated match to d1n9sc_
    protein/RNA complex
  2. Domain d3s6ng_: 3s6n G: [200591]
    Other proteins in same PDB: d3s6na_, d3s6nb_
    automated match to d3swne_
    protein/RNA complex
Mouse (Mus musculus) [TaxId:10090] [226575] (1 PDB entry)
- Domains for 4f7u:
  1. Domain d4f7ug_: 4f7u G: [221067]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3swne_
    complexed with p6g
  2. Domain d4f7uj_: 4f7u J: [221069]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3swne_
    complexed with p6g
Saccharomyces cerevisiae [TaxId:559292] [228531] (2 PDB entries)
1. Domains for 4m75:
  1. Domain d4m75b_: 4m75 B: [235534]
    automated match to d4m78n_
    protein/RNA complex; complexed with cl
  2. Domain d4m75c_: 4m75 C: [228532]
    automated match to d3bw1a_
    protein/RNA complex; complexed with cl
  3. Domain d4m75i_: 4m75 I: [237059]
    automated match to d4m75b_
    protein/RNA complex; complexed with cl
  4. Domain d4m75j_: 4m75 J: [235538]
    automated match to d4m78c_
    protein/RNA complex; complexed with cl
2. Domains for 4m78:
  1. Domain d4m78b_: 4m78 B: [237060]
    automated match to d4m75b_
    protein/RNA complex
  2. Domain d4m78c_: 4m78 C: [229671]
    automated match to d4m75c_
    protein/RNA complex
  3. Domain d4m78g_: 4m78 G: [228974]
    automated match to d1d3bc_
    protein/RNA complex
  4. Domain d4m78i_: 4m78 I: [237061]
    automated match to d4m75b_
    protein/RNA complex
  5. Domain d4m78j_: 4m78 J: [229673]
    automated match to d4m75c_
    protein/RNA complex
  6. Domain d4m78n_: 4m78 N: [228975]
    automated match to d1d3bc_
    protein/RNA complex
Schizosaccharomyces pombe [TaxId:284812] [189773] (4 PDB entries)
1. Domains for 3swn:
  1. Domain d3swna_: 3swn A: [185569]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  2. Domain d3swnb_: 3swn B: [185570]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
  3. Domain d3swnd_: 3swn D: [185571]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  4. Domain d3swne_: 3swn E: [185572]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
  5. Domain d3swnp_: 3swn P: [185573]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  6. Domain d3swnq_: 3swn Q: [185574]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
  7. Domain d3swns_: 3swn S: [185575]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  8. Domain d3swnt_: 3swn T: [185576]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
2. Domains for 4emg:
  1. Domain d4emga_: 4emg A: [195155]
    automated match to d3bw1a_
  2. Domain d4emgb_: 4emg B: [195153]
    automated match to d3bw1a_
  3. Domain d4emgc_: 4emg C: [195152]
    automated match to d3bw1a_
  4. Domain d4emgd_: 4emg D: [195158]
    automated match to d3bw1a_
  5. Domain d4emge_: 4emg E: [195157]
    automated match to d3bw1a_
  6. Domain d4emgf_: 4emg F: [195156]
    automated match to d3bw1a_
  7. Domain d4emgg_: 4emg G: [195154]
    automated match to d3bw1a_
  8. Domain d4emgh_: 4emg H: [195148]
    automated match to d3bw1a_
  9. Domain d4emgi_: 4emg I: [195144]
    automated match to d3bw1a_
  10. Domain d4emgj_: 4emg J: [195147]
    automated match to d3bw1a_
  11. Domain d4emgk_: 4emg K: [195146]
    automated match to d3bw1a_
  12. Domain d4emgl_: 4emg L: [195151]
    automated match to d3bw1a_
  13. Domain d4emgm_: 4emg M: [195150]
    automated match to d3bw1a_
  14. Domain d4emgn_: 4emg N: [195149]
    automated match to d3bw1a_
3. Domains for 4emh:
  1. Domain d4emha_: 4emh A: [234395]
    automated match to d4m78n_
  2. Domain d4emhb_: 4emh B: [234394]
    automated match to d4m78n_
  3. Domain d4emhc_: 4emh C: [234396]
    automated match to d4m78n_
  4. Domain d4emhd_: 4emh D: [234397]
    automated match to d4m78n_
  5. Domain d4emhe_: 4emh E: [234398]
    automated match to d4m78n_
  6. Domain d4emhf_: 4emh F: [234399]
    automated match to d4m78n_
4. Domains for 4emk:
  1. Domain d4emka_: 4emk A: [195160]
    automated match to d3swna_
  2. Domain d4emkb_: 4emk B: [195159]
    automated match to d3swnq_

More info for Protein automated matches from b.38.1.0: automated matches

Timeline for Protein automated matches from b.38.1.0: automated matches:

Protein automated matches from b.38.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.38.1.0: automated matches appears in SCOPe 2.02
Protein automated matches from b.38.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from b.38.1.0: automated matches appears in the current release, SCOPe 2.08