SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.38: Sm-like fold [50181] (5 superfamilies)
core: barrel, open; n*=4, S*=8; meander; SH3-like topology
Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families)
Family b.38.1.0: automated matches [191538] (1 protein)
not a true family
Protein automated matches [190914] (8 species)
not a true protein

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [224863] (1 PDB entry)
- Domains for 4f7u:
  1. Domain d4f7uf_: 4f7u F: [221066]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3s6nf_
    complexed with p6g
  2. Domain d4f7ui_: 4f7u I: [221068]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3s6nf_
    complexed with p6g
Bacillus subtilis [TaxId:1423] [189371] (2 PDB entries)
1. Domains for 3ahu:
  1. Domain d3ahua_: 3ahu A: [198870]
    automated match to d3hsbd_
    protein/RNA complex
  2. Domain d3ahub_: 3ahu B: [198871]
    automated match to d3hsbd_
    protein/RNA complex
  3. Domain d3ahuc_: 3ahu C: [193699]
    automated match to d3hsbd_
    protein/RNA complex
2. Domain for 3hsb:
  - Domain d3hsbd_: 3hsb D: [177805]
    automated match to d1kq1h_
    protein/RNA complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188389] (6 PDB entries)
1. Domains for 3bw1:
  1. Domain d3bw1a_: 3bw1 A: [172872]
    automated match to d1i81d_
    complexed with mpd, so4
  2. Domain d3bw1b_: 3bw1 B: [172873]
    automated match to d1i81d_
    complexed with mpd, so4
2. Domains for 4c92:
  1. Domain d4c92b_: 4c92 B: [240047]
    automated match to d4m78b_
    protein/RNA complex
  2. Domain d4c92c_: 4c92 C: [228296]
    automated match to d3bw1a_
    protein/RNA complex
  3. Domain d4c92d_: 4c92 D: [234294]
    automated match to d4m78n_
    protein/RNA complex
  4. Domain d4c92e_: 4c92 E: [228295]
    automated match to d3swna_
    protein/RNA complex
  5. Domain d4c92f_: 4c92 F: [228294]
    automated match to d3swnb_
    protein/RNA complex
  6. Domain d4c92g_: 4c92 G: [240048]
    automated match to d3bw1a_
    protein/RNA complex
3. Domains for 4m75:
  1. Domain d4m75d_: 4m75 D: [235535]
    automated match to d4c92f_
    protein/RNA complex; complexed with cl
  2. Domain d4m75e_: 4m75 E: [235536]
    automated match to d4c92e_
    protein/RNA complex; complexed with cl
  3. Domain d4m75k_: 4m75 K: [235537]
    automated match to d4c92f_
    protein/RNA complex; complexed with cl
  4. Domain d4m75l_: 4m75 L: [235539]
    automated match to d4c92e_
    protein/RNA complex; complexed with cl
4. Domains for 4m77:
  1. Domain d4m77c_: 4m77 C: [253758]
    automated match to d3bw1a_
    protein/RNA complex
  2. Domain d4m77d_: 4m77 D: [253759]
    automated match to d4c92f_
    protein/RNA complex
  3. Domain d4m77e_: 4m77 E: [253760]
    automated match to d4c92e_
    protein/RNA complex
  4. Domain d4m77f_: 4m77 F: [253761]
    automated match to d3bw1a_
    protein/RNA complex
  5. Domain d4m77j_: 4m77 J: [253764]
    automated match to d3bw1a_
    protein/RNA complex
  6. Domain d4m77k_: 4m77 K: [253765]
    automated match to d4c92f_
    protein/RNA complex
  7. Domain d4m77l_: 4m77 L: [253766]
    automated match to d4c92e_
    protein/RNA complex
  8. Domain d4m77m_: 4m77 M: [253767]
    automated match to d3bw1a_
    protein/RNA complex
5. Domains for 4m78:
  1. Domain d4m78d_: 4m78 D: [229669]
    automated match to d4c92f_
    protein/RNA complex
  2. Domain d4m78e_: 4m78 E: [229670]
    automated match to d4c92e_
    protein/RNA complex
  3. Domain d4m78f_: 4m78 F: [240525]
    automated match to d3bw1a_
    protein/RNA complex
  4. Domain d4m78k_: 4m78 K: [229674]
    automated match to d4c92f_
    protein/RNA complex
  5. Domain d4m78l_: 4m78 L: [229672]
    automated match to d4c92e_
    protein/RNA complex
  6. Domain d4m78m_: 4m78 M: [240526]
    automated match to d3bw1a_
    protein/RNA complex
6. Domains for 4n0a:
  1. Domain d4n0aa_: 4n0a A: [253835]
    automated match to d3bw1a_
    protein/RNA complex
  2. Domain d4n0ab_: 4n0a B: [253836]
    automated match to d3bw1a_
    protein/RNA complex
  3. Domain d4n0ae_: 4n0a E: [253839]
    automated match to d3bw1a_
    protein/RNA complex
  4. Domain d4n0af_: 4n0a F: [253840]
    automated match to d3bw1a_
    protein/RNA complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [228531] (4 PDB entries)
1. Domains for 4m75:
  1. Domain d4m75b_: 4m75 B: [235534]
    automated match to d4m78n_
    protein/RNA complex; complexed with cl
  2. Domain d4m75c_: 4m75 C: [228532]
    automated match to d3bw1a_
    protein/RNA complex; complexed with cl
  3. Domain d4m75f_: 4m75 F: [240521]
    automated match to d3bw1a_
    protein/RNA complex; complexed with cl
  4. Domain d4m75g_: 4m75 G: [240522]
    automated match to d4m78n_
    protein/RNA complex; complexed with cl
  5. Domain d4m75i_: 4m75 I: [237059]
    automated match to d4m75b_
    protein/RNA complex; complexed with cl
  6. Domain d4m75j_: 4m75 J: [235538]
    automated match to d4m78c_
    protein/RNA complex; complexed with cl
  7. Domain d4m75m_: 4m75 M: [240523]
    automated match to d3bw1a_
    protein/RNA complex; complexed with cl
  8. Domain d4m75n_: 4m75 N: [240524]
    automated match to d4m78n_
    protein/RNA complex; complexed with cl
2. Domains for 4m77:
  1. Domain d4m77b_: 4m77 B: [253757]
    automated match to d4m78b_
    protein/RNA complex
  2. Domain d4m77g_: 4m77 G: [253762]
    automated match to d4m78n_
    protein/RNA complex
  3. Domain d4m77i_: 4m77 I: [253763]
    automated match to d4m78b_
    protein/RNA complex
  4. Domain d4m77n_: 4m77 N: [253768]
    automated match to d4m78n_
    protein/RNA complex
3. Domains for 4m78:
  1. Domain d4m78b_: 4m78 B: [237060]
    automated match to d4m75b_
    protein/RNA complex
  2. Domain d4m78c_: 4m78 C: [229671]
    automated match to d4m75c_
    protein/RNA complex
  3. Domain d4m78g_: 4m78 G: [228974]
    automated match to d1d3bc_
    protein/RNA complex
  4. Domain d4m78i_: 4m78 I: [237061]
    automated match to d4m75b_
    protein/RNA complex
  5. Domain d4m78j_: 4m78 J: [229673]
    automated match to d4m75c_
    protein/RNA complex
  6. Domain d4m78n_: 4m78 N: [228975]
    automated match to d1d3bc_
    protein/RNA complex
4. Domains for 4n0a:
  1. Domain d4n0ac_: 4n0a C: [253837]
    automated match to d4m78b_
    protein/RNA complex
  2. Domain d4n0ad_: 4n0a D: [253838]
    automated match to d4m78b_
    protein/RNA complex
  3. Domain d4n0ag_: 4n0a G: [253841]
    automated match to d4m78b_
    protein/RNA complex

Human (Homo sapiens) [TaxId:9606] [196227] (4 PDB entries)

Domains for 1vu2:

Domain d1vu24_: 1vu2 4: [240849]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d3swne_
complexed with so4

Domain d1vu2d_: 1vu2 D: [240852]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d4f7ui_
complexed with so4

Domain d1vu2f_: 1vu2 f: [240853]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d3swne_
complexed with so4

Domain d1vu2h_: 1vu2 H: [240855]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d3swne_
complexed with so4

Domain d1vu2l_: 1vu2 L: [240858]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d4f7ui_
complexed with so4

Domain d1vu2n_: 1vu2 n: [240859]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d3swne_
complexed with so4

Domain d1vu2p_: 1vu2 P: [240861]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d3swne_
complexed with so4

Domain d1vu2t_: 1vu2 T: [240864]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d4f7ui_
complexed with so4

Domain d1vu2v_: 1vu2 v: [240865]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d3swne_
complexed with so4

Domain d1vu2x_: 1vu2 X: [240867]
Other proteins in same PDB: d1vu2a_, d1vu2b_, d1vu2g_, d1vu2i_, d1vu2j_, d1vu2o_, d1vu2q_, d1vu2r_, d1vu2w_, d1vu2y_, d1vu2z_
automated match to d3swne_
complexed with so4

Domains for 1vu3:
1. Domain d1vu3d_: 1vu3 D: [240872]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d4f7ui_
  complexed with so4
2. Domain d1vu3f_: 1vu3 f: [240873]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d3swne_
  complexed with so4
3. Domain d1vu3h_: 1vu3 H: [240875]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d3swne_
  complexed with so4
4. Domain d1vu3l_: 1vu3 L: [240878]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d4f7ui_
  complexed with so4
5. Domain d1vu3n_: 1vu3 n: [240879]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d3swne_
  complexed with so4
6. Domain d1vu3p_: 1vu3 P: [240881]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d3swne_
  complexed with so4
7. Domain d1vu3t_: 1vu3 T: [240884]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d4f7ui_
  complexed with so4
8. Domain d1vu3v_: 1vu3 v: [240885]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d3swne_
  complexed with so4
9. Domain d1vu3x_: 1vu3 X: [240886]
  Other proteins in same PDB: d1vu3a_, d1vu3b_, d1vu3g_, d1vu3i_, d1vu3j_, d1vu3o_, d1vu3q_, d1vu3r_, d1vu3y_, d1vu3z_
  automated match to d3swne_
  complexed with so4
Domains for 3s6n:
1. Domain d3s6nf_: 3s6n F: [196228]
  Other proteins in same PDB: d3s6na_, d3s6nb_
  automated match to d1n9sc_
  protein/RNA complex
2. Domain d3s6ng_: 3s6n G: [200591]
  Other proteins in same PDB: d3s6na_, d3s6nb_
  automated match to d3swne_
  protein/RNA complex

Domains for 4f77:

Domain d4f774_: 4f77 4: [251903]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d3swne_
complexed with so4

Domain d4f77d_: 4f77 D: [251906]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d4f7ui_
complexed with so4

Domain d4f77f_: 4f77 f: [251907]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d3swne_
complexed with so4

Domain d4f77h_: 4f77 H: [251909]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d3swne_
complexed with so4

Domain d4f77l_: 4f77 L: [251912]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d4f7ui_
complexed with so4

Domain d4f77n_: 4f77 n: [251913]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d3swne_
complexed with so4

Domain d4f77p_: 4f77 P: [251915]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d3swne_
complexed with so4

Domain d4f77t_: 4f77 T: [251918]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d4f7ui_
complexed with so4

Domain d4f77v_: 4f77 v: [251919]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d3swne_
complexed with so4

Domain d4f77x_: 4f77 X: [251921]
Other proteins in same PDB: d4f77a_, d4f77b_, d4f77g_, d4f77i_, d4f77j_, d4f77o_, d4f77q_, d4f77r_, d4f77w_, d4f77y_, d4f77z_
automated match to d3swne_
complexed with so4

Listeria monocytogenes [TaxId:1639] [259405] (2 PDB entries)
1. Domains for 4nl3:
  1. Domain d4nl3a_: 4nl3 A: [259406]
    automated match to d4j6wf_
    protein/RNA complex
  2. Domain d4nl3b_: 4nl3 B: [259407]
    automated match to d4j6wf_
    protein/RNA complex
  3. Domain d4nl3k_: 4nl3 K: [259835]
    automated match to d4j6wf_
    protein/RNA complex
2. Domains for 4noy:
  1. Domain d4noya_: 4noy A: [259408]
    automated match to d3quia_
    complexed with pgo
  2. Domain d4noye_: 4noy E: [259838]
    automated match to d3quia_
    complexed with pgo
Mouse (Mus musculus) [TaxId:10090] [226575] (1 PDB entry)
- Domains for 4f7u:
  1. Domain d4f7ug_: 4f7u G: [221067]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3swne_
    complexed with p6g
  2. Domain d4f7uj_: 4f7u J: [221069]
    Other proteins in same PDB: d4f7ua_, d4f7ub_, d4f7uc_, d4f7ud_
    automated match to d3swne_
    complexed with p6g
Schizosaccharomyces pombe [TaxId:284812] [189773] (4 PDB entries)
1. Domains for 3swn:
  1. Domain d3swna_: 3swn A: [185569]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  2. Domain d3swnb_: 3swn B: [185570]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
  3. Domain d3swnd_: 3swn D: [185571]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  4. Domain d3swne_: 3swn E: [185572]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
  5. Domain d3swnp_: 3swn P: [185573]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  6. Domain d3swnq_: 3swn Q: [185574]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
  7. Domain d3swns_: 3swn S: [185575]
    automated match to d2fwka1
    protein/RNA complex; complexed with zn
  8. Domain d3swnt_: 3swn T: [185576]
    automated match to d1n9sc_
    protein/RNA complex; complexed with zn
2. Domains for 4emg:
  1. Domain d4emga_: 4emg A: [195155]
    automated match to d3bw1a_
  2. Domain d4emgb_: 4emg B: [195153]
    automated match to d3bw1a_
  3. Domain d4emgc_: 4emg C: [195152]
    automated match to d3bw1a_
  4. Domain d4emgd_: 4emg D: [195158]
    automated match to d3bw1a_
  5. Domain d4emge_: 4emg E: [195157]
    automated match to d3bw1a_
  6. Domain d4emgf_: 4emg F: [195156]
    automated match to d3bw1a_
  7. Domain d4emgg_: 4emg G: [195154]
    automated match to d3bw1a_
  8. Domain d4emgh_: 4emg H: [195148]
    automated match to d3bw1a_
  9. Domain d4emgi_: 4emg I: [195144]
    automated match to d3bw1a_
  10. Domain d4emgj_: 4emg J: [195147]
    automated match to d3bw1a_
  11. Domain d4emgk_: 4emg K: [195146]
    automated match to d3bw1a_
  12. Domain d4emgl_: 4emg L: [195151]
    automated match to d3bw1a_
  13. Domain d4emgm_: 4emg M: [195150]
    automated match to d3bw1a_
  14. Domain d4emgn_: 4emg N: [195149]
    automated match to d3bw1a_
3. Domains for 4emh:
  1. Domain d4emha_: 4emh A: [234395]
    automated match to d4m78n_
  2. Domain d4emhb_: 4emh B: [234394]
    automated match to d4m78n_
  3. Domain d4emhc_: 4emh C: [234396]
    automated match to d4m78n_
  4. Domain d4emhd_: 4emh D: [234397]
    automated match to d4m78n_
  5. Domain d4emhe_: 4emh E: [234398]
    automated match to d4m78n_
  6. Domain d4emhf_: 4emh F: [234399]
    automated match to d4m78n_
  7. Domain d4emhg_: 4emh G: [240102]
    automated match to d4emhb_
  8. Domain d4emhh_: 4emh H: [240103]
    automated match to d4emhb_
  9. Domain d4emhi_: 4emh I: [240104]
    automated match to d4emhb_
  10. Domain d4emhj_: 4emh J: [240105]
    automated match to d4emhb_
  11. Domain d4emhk_: 4emh K: [240106]
    automated match to d4emhb_
  12. Domain d4emhl_: 4emh L: [240107]
    automated match to d4emhb_
  13. Domain d4emhm_: 4emh M: [240108]
    automated match to d4emhb_
  14. Domain d4emhn_: 4emh N: [240109]
    automated match to d4emhb_
  15. Domain d4emho_: 4emh O: [240110]
    automated match to d4emhb_
  16. Domain d4emhp_: 4emh P: [240111]
    automated match to d4emhb_
  17. Domain d4emhq_: 4emh Q: [240112]
    automated match to d4emhb_
  18. Domain d4emhr_: 4emh R: [240113]
    automated match to d4emhb_
  19. Domain d4emht_: 4emh T: [240114]
    automated match to d4emhb_
  20. Domain d4emhu_: 4emh U: [240115]
    automated match to d4emhb_
  21. Domain d4emhv_: 4emh V: [240116]
    automated match to d4emhb_
  22. Domain d4emhw_: 4emh W: [240117]
    automated match to d4emhb_
  23. Domain d4emhx_: 4emh X: [240118]
    automated match to d4emhb_
  24. Domain d4emhy_: 4emh Y: [240119]
    automated match to d4emhb_
4. Domains for 4emk:
  1. Domain d4emka_: 4emk A: [195160]
    automated match to d3swna_
  2. Domain d4emkb_: 4emk B: [195159]
    automated match to d3swnq_

More info for Protein automated matches from b.38.1.0: automated matches

Timeline for Protein automated matches from b.38.1.0: automated matches:

Protein automated matches from b.38.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.38.1.0: automated matches appears in SCOPe 2.03
Protein automated matches from b.38.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.38.1.0: automated matches appears in the current release, SCOPe 2.08