SCOPe 2.08: Protein: Alkylated DNA repair protein AlkB

Lineage for Protein: Alkylated DNA repair protein AlkB

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families)
Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
Family b.82.2.10: AlkB-like [141628] (3 proteins)
automatically mapped to Pfam PF13532
Protein Alkylated DNA repair protein AlkB [141629] (1 species)

Species:

Escherichia coli [TaxId:562] [141630] (11 PDB entries)
Uniprot P05050 15-214
1. Domain for 2fd8:
  - Domain d2fd8a1: 2fd8 A:15-214 [133296]
    protein/DNA complex; complexed with akg, fe2
2. Domain for 2fdf:
  - Domain d2fdfa_: 2fdf A: [133308]
    automated match to d2fd8a1
    protein/DNA complex; complexed with akg, co
3. Domain for 2fdg:
  - Domain d2fdga_: 2fdg A: [133309]
    automated match to d2fd8a1
    protein/DNA complex; complexed with fe2, sin
4. Domain for 2fdh:
  - Domain d2fdha_: 2fdh A: [133310]
    automated match to d2fd8a1
    protein/DNA complex; complexed with akg, mn
5. Domain for 2fdi:
  - Domain d2fdia_: 2fdi A: [133311]
    automated match to d2fd8a1
    protein/DNA complex; complexed with akg, fe2, sin
6. Domain for 2fdj:
  - Domain d2fdja2: 2fdj A:13-216 [133312]
    Other proteins in same PDB: d2fdja3
    automated match to d2fd8a1
    complexed with fe2, sin
7. Domain for 2fdk:
  - Domain d2fdka_: 2fdk A: [133313]
    automated match to d2fd8a1
    protein/DNA complex; complexed with akg, fe2, sin
8. Domain for 3bi3:
  - Domain d3bi3a_: 3bi3 A: [172643]
    automated match to d2fd8a1
    protein/DNA complex; complexed with akg, mn
9. Domain for 3bie:
  - Domain d3biea_: 3bie A: [172644]
    automated match to d2fd8a1
    protein/DNA complex; complexed with akg, mn
10. Domain for 3bkz:
  - Domain d3bkza_: 3bkz A: [172695]
    automated match to d2fd8a1
    protein/DNA complex; complexed with akg, mn
11. Domain for 4rfr:
  - Domain d4rfrb_: 4rfr B: [313154]
    automated match to d3khca_
    complexed with mn, rhn

More info for Protein Alkylated DNA repair protein AlkB from b.82.2.10: AlkB-like

Timeline for Protein Alkylated DNA repair protein AlkB from b.82.2.10: AlkB-like:

Protein Alkylated DNA repair protein AlkB from b.82.2.10: AlkB-like first appeared in SCOP 1.73
Protein Alkylated DNA repair protein AlkB from b.82.2.10: AlkB-like appears in SCOPe 2.07