SCOPe 2.08: Protein: Griffithsin

Lineage for Protein: Griffithsin

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.77: beta-Prism I [51091] (4 superfamilies)
consists of 3 4-stranded sheets; strands are parallel to the 3-fold axis
duplication: has internal pseudo threefold symmetry
Superfamily b.77.3: Mannose-binding lectins [51101] (2 families)
Family b.77.3.1: Mannose-binding lectins [51102] (7 proteins)
Protein Griffithsin [141569] (2 species)
single-chain subunits form a segment-swapped dimer

Species:

Griffithsia sp. Q66D336 [TaxId:373036] [159279] (1 PDB entry)
- Domains for 2nuo:
  1. Domain d2nuoa1: 2nuo A:1-121 [148456]
    automatically matched to d2gtya1
    complexed with bgc, edo, so4
  2. Domain d2nuob1: 2nuo B:1-121 [148457]
    automatically matched to d2gtya1
    complexed with bgc, edo, so4
Red alga (Griffithsia) [TaxId:35158] [141570] (7 PDB entries)
Uniprot P84801 1-121
1. Domains for 2gty:
  1. Domain d2gtya1: 2gty A:1-121 [135713]
    complexed with edo, so4
  2. Domain d2gtyb1: 2gty B:1-121 [135714]
    automatically matched to 2GTY A:1-121
    complexed with edo, so4
2. Domains for 2guc:
  1. Domain d2guca1: 2guc A:1-121 [135730]
    automatically matched to 2GTY A:1-121
    complexed with edo, man, so4
  2. Domain d2gucb1: 2guc B:1-121 [135731]
    automatically matched to 2GTY A:1-121
    complexed with edo, man, so4
3. Domains for 2gud:
  1. Domain d2guda1: 2gud A:1-121 [135732]
    automatically matched to 2GTY A:1-121
    complexed with bma, edo, man, so4
  2. Domain d2gudb1: 2gud B:1-121 [135733]
    automatically matched to 2GTY A:1-121
    complexed with bma, edo, man, so4
4. Domains for 2gue:
  1. Domain d2guea1: 2gue A:1-121 [135734]
    automatically matched to 2GTY A:1-121
    complexed with edo, nag, so4
  2. Domain d2gueb1: 2gue B:1-121 [135735]
    automatically matched to 2GTY A:1-121
    complexed with edo, nag, so4
5. Domain for 2gux:
  - Domain d2guxa1: 2gux A:1-121 [135753]
    Other proteins in same PDB: d2guxa2
    complexed with so4
6. Domains for 2hyq:
  1. Domain d2hyqa1: 2hyq A:1-121 [136901]
    automatically matched to 2GTY A:1-121
    complexed with so4
  2. Domain d2hyqb1: 2hyq B:1-121 [136902]
    automatically matched to 2GTY A:1-121
    complexed with so4
7. Domains for 2hyr:
  1. Domain d2hyra1: 2hyr A:1-121 [136903]
    automatically matched to 2GTY A:1-121
    complexed with edo, mg, so4
  2. Domain d2hyrb1: 2hyr B:1-121 [136904]
    automatically matched to 2GTY A:1-121
    complexed with edo, mg, so4

More info for Protein Griffithsin from b.77.3.1: Mannose-binding lectins

Timeline for Protein Griffithsin from b.77.3.1: Mannose-binding lectins:

Protein Griffithsin from b.77.3.1: Mannose-binding lectins first appeared in SCOP 1.73
Protein Griffithsin from b.77.3.1: Mannose-binding lectins appears in SCOPe 2.07