SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.58: Aminoacid dehydrogenase-like, N-terminal domain [53222] (1 superfamily)
core: 3 layers: a/b/a; parallel beta-sheet of 4 strands; 2134
Superfamily c.58.1: Aminoacid dehydrogenase-like, N-terminal domain [53223] (6 families)
Family c.58.1.1: Aminoacid dehydrogenases [53224] (4 proteins)
dimerisation domain; contains additional structures including two extra N-terminal strands in the beta-sheet
Protein automated matches [227004] (3 species)
not a true protein

Species:

Clostridium symbiosum [TaxId:1512] [231613] (1 PDB entry)
- Domains for 2yfh:
  1. Domain d2yfha1: 2yfh A:1-195 [231614]
    Other proteins in same PDB: d2yfha2, d2yfhb2, d2yfhc2, d2yfhd2, d2yfhe2, d2yfhf2
    automated match to d1bgva2
  2. Domain d2yfhb1: 2yfh B:2-195 [231617]
    Other proteins in same PDB: d2yfha2, d2yfhb2, d2yfhc2, d2yfhd2, d2yfhe2, d2yfhf2
    automated match to d1bgva2
  3. Domain d2yfhc1: 2yfh C:2-195 [231615]
    Other proteins in same PDB: d2yfha2, d2yfhb2, d2yfhc2, d2yfhd2, d2yfhe2, d2yfhf2
    automated match to d1bgva2
  4. Domain d2yfhd1: 2yfh D:2-195 [231616]
    Other proteins in same PDB: d2yfha2, d2yfhb2, d2yfhc2, d2yfhd2, d2yfhe2, d2yfhf2
    automated match to d1bgva2
  5. Domain d2yfhe1: 2yfh E:1-195 [231618]
    Other proteins in same PDB: d2yfha2, d2yfhb2, d2yfhc2, d2yfhd2, d2yfhe2, d2yfhf2
    automated match to d1bgva2
  6. Domain d2yfhf1: 2yfh F:2-195 [231619]
    Other proteins in same PDB: d2yfha2, d2yfhb2, d2yfhc2, d2yfhd2, d2yfhe2, d2yfhf2
    automated match to d1bgva2
Cow (Bos taurus) [TaxId:9913] [225673] (5 PDB entries)
1. Domains for 3etd:
  1. Domain d3etda1: 3etd A:1-208 [209639]
    Other proteins in same PDB: d3etda2, d3etdb2, d3etdc2, d3etdd2, d3etde2, d3etdf2
    automated match to d1l1fa2
    complexed with b1t, glu, gtp, ndp
  2. Domain d3etdb1: 3etd B:1-208 [209641]
    Other proteins in same PDB: d3etda2, d3etdb2, d3etdc2, d3etdd2, d3etde2, d3etdf2
    automated match to d1l1fa2
    complexed with b1t, glu, gtp, ndp
  3. Domain d3etdc1: 3etd C:1-208 [209643]
    Other proteins in same PDB: d3etda2, d3etdb2, d3etdc2, d3etdd2, d3etde2, d3etdf2
    automated match to d1l1fa2
    complexed with b1t, glu, gtp, ndp
  4. Domain d3etdd1: 3etd D:1-208 [209645]
    Other proteins in same PDB: d3etda2, d3etdb2, d3etdc2, d3etdd2, d3etde2, d3etdf2
    automated match to d1l1fa2
    complexed with b1t, glu, gtp, ndp
  5. Domain d3etde1: 3etd E:1-208 [209647]
    Other proteins in same PDB: d3etda2, d3etdb2, d3etdc2, d3etdd2, d3etde2, d3etdf2
    automated match to d1l1fa2
    complexed with b1t, glu, gtp, ndp
  6. Domain d3etdf1: 3etd F:1-208 [209649]
    Other proteins in same PDB: d3etda2, d3etdb2, d3etdc2, d3etdd2, d3etde2, d3etdf2
    automated match to d1l1fa2
    complexed with b1t, glu, gtp, ndp
2. Domains for 3ete:
  1. Domain d3etea1: 3ete A:4-208 [245906]
    Other proteins in same PDB: d3etea2, d3eteb2, d3etec2, d3eted2, d3etee2, d3etef2
    automated match to d3etda1
    complexed with glu, gtp, h3p, ndp
  2. Domain d3eteb1: 3ete B:4-208 [245908]
    Other proteins in same PDB: d3etea2, d3eteb2, d3etec2, d3eted2, d3etee2, d3etef2
    automated match to d3etda1
    complexed with glu, gtp, h3p, ndp
  3. Domain d3etec1: 3ete C:4-208 [245910]
    Other proteins in same PDB: d3etea2, d3eteb2, d3etec2, d3eted2, d3etee2, d3etef2
    automated match to d3etda1
    complexed with glu, gtp, h3p, ndp
  4. Domain d3eted1: 3ete D:4-208 [245912]
    Other proteins in same PDB: d3etea2, d3eteb2, d3etec2, d3eted2, d3etee2, d3etef2
    automated match to d3etda1
    complexed with glu, gtp, h3p, ndp
  5. Domain d3etee1: 3ete E:4-208 [245914]
    Other proteins in same PDB: d3etea2, d3eteb2, d3etec2, d3eted2, d3etee2, d3etef2
    automated match to d3etda1
    complexed with glu, gtp, h3p, ndp
  6. Domain d3etef1: 3ete F:4-208 [245916]
    Other proteins in same PDB: d3etea2, d3eteb2, d3etec2, d3eted2, d3etee2, d3etef2
    automated match to d3etda1
    complexed with glu, gtp, h3p, ndp
3. Domains for 3etg:
  1. Domain d3etga1: 3etg A:1-208 [209651]
    Other proteins in same PDB: d3etga2, d3etgb2, d3etgc2, d3etgd2, d3etge2, d3etgf2
    automated match to d1l1fa2
    complexed with glu, gtp, gwd, ndp
  2. Domain d3etgb1: 3etg B:1-208 [209653]
    Other proteins in same PDB: d3etga2, d3etgb2, d3etgc2, d3etgd2, d3etge2, d3etgf2
    automated match to d1l1fa2
    complexed with glu, gtp, gwd, ndp
  3. Domain d3etgc1: 3etg C:1-208 [209655]
    Other proteins in same PDB: d3etga2, d3etgb2, d3etgc2, d3etgd2, d3etge2, d3etgf2
    automated match to d1l1fa2
    complexed with glu, gtp, gwd, ndp
  4. Domain d3etgd1: 3etg D:1-208 [209657]
    Other proteins in same PDB: d3etga2, d3etgb2, d3etgc2, d3etgd2, d3etge2, d3etgf2
    automated match to d1l1fa2
    complexed with glu, gtp, gwd, ndp
  5. Domain d3etge1: 3etg E:1-208 [209659]
    Other proteins in same PDB: d3etga2, d3etgb2, d3etgc2, d3etgd2, d3etge2, d3etgf2
    automated match to d1l1fa2
    complexed with glu, gtp, gwd, ndp
  6. Domain d3etgf1: 3etg F:1-208 [209661]
    Other proteins in same PDB: d3etga2, d3etgb2, d3etgc2, d3etgd2, d3etge2, d3etgf2
    automated match to d1l1fa2
    complexed with glu, gtp, gwd, ndp
4. Domains for 6dhd:
  1. Domain d6dhda1: 6dhd A:1-208 [355277]
    Other proteins in same PDB: d6dhda2, d6dhdb2, d6dhdc2, d6dhdd2, d6dhde2, d6dhdf2
    automated match to d3etda1
    complexed with glu, gtp, nai
  2. Domain d6dhdb1: 6dhd B:1-208 [355116]
    Other proteins in same PDB: d6dhda2, d6dhdb2, d6dhdc2, d6dhdd2, d6dhde2, d6dhdf2
    automated match to d3etda1
    complexed with glu, gtp, nai
  3. Domain d6dhdc1: 6dhd C:1-208 [355261]
    Other proteins in same PDB: d6dhda2, d6dhdb2, d6dhdc2, d6dhdd2, d6dhde2, d6dhdf2
    automated match to d3etda1
    complexed with glu, gtp, nai
  4. Domain d6dhdd1: 6dhd D:1-208 [355250]
    Other proteins in same PDB: d6dhda2, d6dhdb2, d6dhdc2, d6dhdd2, d6dhde2, d6dhdf2
    automated match to d3etda1
    complexed with glu, gtp, nai
  5. Domain d6dhde1: 6dhd E:1-208 [355239]
    Other proteins in same PDB: d6dhda2, d6dhdb2, d6dhdc2, d6dhdd2, d6dhde2, d6dhdf2
    automated match to d3etda1
  6. Domain d6dhdf1: 6dhd F:1-208 [355120]
    Other proteins in same PDB: d6dhda2, d6dhdb2, d6dhdc2, d6dhdd2, d6dhde2, d6dhdf2
    automated match to d3etda1
    complexed with glu, gtp, nai
5. Domains for 6dhq:
  1. Domain d6dhqa1: 6dhq A:1-208 [355129]
    Other proteins in same PDB: d6dhqa2, d6dhqb2, d6dhqc2, d6dhqd2, d6dhqe2, d6dhqf2
    automated match to d3etda1
    complexed with glu, gtp, ndp
  2. Domain d6dhqb1: 6dhq B:1-208 [355123]
    Other proteins in same PDB: d6dhqa2, d6dhqb2, d6dhqc2, d6dhqd2, d6dhqe2, d6dhqf2
    automated match to d3etda1
    complexed with glu, gtp, ndp
  3. Domain d6dhqc1: 6dhq C:1-208 [355248]
    Other proteins in same PDB: d6dhqa2, d6dhqb2, d6dhqc2, d6dhqd2, d6dhqe2, d6dhqf2
    automated match to d3etda1
    complexed with glu, gtp, ndp
  4. Domain d6dhqd1: 6dhq D:1-208 [355127]
    Other proteins in same PDB: d6dhqa2, d6dhqb2, d6dhqc2, d6dhqd2, d6dhqe2, d6dhqf2
    automated match to d3etda1
    complexed with glu, gtp, ndp
  5. Domain d6dhqe1: 6dhq E:1-208 [355252]
    Other proteins in same PDB: d6dhqa2, d6dhqb2, d6dhqc2, d6dhqd2, d6dhqe2, d6dhqf2
    automated match to d3etda1
    complexed with glu, gtp, ndp
  6. Domain d6dhqf1: 6dhq F:1-208 [355155]
    Other proteins in same PDB: d6dhqa2, d6dhqb2, d6dhqc2, d6dhqd2, d6dhqe2, d6dhqf2
    automated match to d3etda1
    complexed with glu, gtp, ndp
Homo sapiens [TaxId:9606] [353655] (2 PDB entries)
1. Domains for 6dqg:
  1. Domain d6dqga1: 6dqg A:10-212 [353832]
    Other proteins in same PDB: d6dqga2, d6dqgb2, d6dqgc2, d6dqgd2, d6dqge2, d6dqgf2
    automated match to d1l1fa2
    complexed with po4; mutant
  2. Domain d6dqgb1: 6dqg B:10-212 [353834]
    Other proteins in same PDB: d6dqga2, d6dqgb2, d6dqgc2, d6dqgd2, d6dqge2, d6dqgf2
    automated match to d1l1fa2
    complexed with po4; mutant
  3. Domain d6dqgc1: 6dqg C:10-212 [353665]
    Other proteins in same PDB: d6dqga2, d6dqgb2, d6dqgc2, d6dqgd2, d6dqge2, d6dqgf2
    automated match to d1l1fa2
    complexed with po4; mutant
  4. Domain d6dqgd1: 6dqg D:10-212 [353658]
    Other proteins in same PDB: d6dqga2, d6dqgb2, d6dqgc2, d6dqgd2, d6dqge2, d6dqgf2
    automated match to d1l1fa2
    complexed with po4; mutant
  5. Domain d6dqge1: 6dqg E:10-212 [353656]
    Other proteins in same PDB: d6dqga2, d6dqgb2, d6dqgc2, d6dqgd2, d6dqge2, d6dqgf2
    automated match to d1l1fa2
    complexed with po4; mutant
  6. Domain d6dqgf1: 6dqg F:10-212 [353657]
    Other proteins in same PDB: d6dqga2, d6dqgb2, d6dqgc2, d6dqgd2, d6dqge2, d6dqgf2
    automated match to d1l1fa2
    complexed with po4; mutant
2. Domains for 6g2u:
  1. Domain d6g2ua1: 6g2u A:8-212 [367422]
    Other proteins in same PDB: d6g2ua2, d6g2ub2, d6g2uc2, d6g2ud2, d6g2ue2, d6g2uf2
    automated match to d3etda1
    complexed with cl, na, po4
  2. Domain d6g2ub1: 6g2u B:11-212 [367531]
    Other proteins in same PDB: d6g2ua2, d6g2ub2, d6g2uc2, d6g2ud2, d6g2ue2, d6g2uf2
    automated match to d3etda1
    complexed with cl, na, po4
  3. Domain d6g2uc1: 6g2u C:11-212 [367375]
    Other proteins in same PDB: d6g2ua2, d6g2ub2, d6g2uc2, d6g2ud2, d6g2ue2, d6g2uf2
    automated match to d3etda1
    complexed with cl, na, po4
  4. Domain d6g2ud1: 6g2u D:8-212 [367366]
    Other proteins in same PDB: d6g2ua2, d6g2ub2, d6g2uc2, d6g2ud2, d6g2ue2, d6g2uf2
    automated match to d3etda1
    complexed with cl, na, po4
  5. Domain d6g2ue1: 6g2u E:10-212 [367432]
    Other proteins in same PDB: d6g2ua2, d6g2ub2, d6g2uc2, d6g2ud2, d6g2ue2, d6g2uf2
    automated match to d3etda1
    complexed with cl, na, po4
  6. Domain d6g2uf1: 6g2u F:8-212 [367391]
    Other proteins in same PDB: d6g2ua2, d6g2ub2, d6g2uc2, d6g2ud2, d6g2ue2, d6g2uf2
    automated match to d3etda1
    complexed with cl, na, po4

More info for Protein automated matches from c.58.1.1: Aminoacid dehydrogenases

Timeline for Protein automated matches from c.58.1.1: Aminoacid dehydrogenases:

Protein automated matches from c.58.1.1: Aminoacid dehydrogenases first appeared in SCOPe 2.03
Protein automated matches from c.58.1.1: Aminoacid dehydrogenases appears in SCOPe 2.06
Protein automated matches from c.58.1.1: Aminoacid dehydrogenases appears in the current release, SCOPe 2.08