PDB entry 6ijj

View 6ijj on RCSB PDB site
Description: Photosystem I of Chlamydomonas reinhardtii
Class: membrane protein
Keywords: Photosystem, Antenna, green alga, MEMBRANE PROTEIN
Deposited on 2018-10-10, released 2019-03-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-01, with a file datestamp of 2019-04-26.
Experiment type: EM
Resolution: 2.89 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Lhca1
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijj1_
  • Chain '3':
    Compound: lhca3
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijj3_
  • Chain '4':
    Compound: Lhca4
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (Start-289)
    Domains in SCOPe 2.08: d6ijj4_
  • Chain '5':
    Compound: Lhca5
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
  • Chain '6':
    Compound: Lhca6
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (Start-317)
  • Chain '7':
    Compound: Lhca7
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (Start-240)
    Domains in SCOPe 2.08: d6ijj7_
  • Chain '8':
    Compound: Lhca8
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijj8_
  • Chain 'A':
    Compound: PsaA
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (Start-750)
    Domains in SCOPe 2.08: d6ijja_
  • Chain 'B':
    Compound: PsaB
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijjb_
  • Chain 'C':
    Compound: PsaC
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (Start-80)
    Domains in SCOPe 2.08: d6ijjc_
  • Chain 'D':
    Compound: PsaD
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijjd_
  • Chain 'E':
    Compound: PsaE
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijje_
  • Chain 'F':
    Compound: PsaF
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijjf_
  • Chain 'I':
    Compound: PsaI
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
  • Chain 'J':
    Compound: PsaJ
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (0-40)
    Domains in SCOPe 2.08: d6ijjj_
  • Chain 'K':
    Compound: PsaK
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (Start-159)
  • Chain 'L':
    Compound: PsaL
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ
    Domains in SCOPe 2.08: d6ijjl_
  • Chain 'a':
    Compound: Lhca1
    Species: Chlamydomonas reinhardtii [TaxId:3055]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IJJ (Start-247)
  • Heterogens: CLA, PQN, LHG, BCR, SF4, LMU, LMG, DGD, LUT, XAT, NEX

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >6ijj1 (1:)
mgelsradsllrtitkppikmalsmrtlsartaaprgfsgrrvaavsngsrvtmkagnwl
pgsdapawlpddlpgnygfdplslgkepaslkrftesevihgrwamlgvagslavellgy
gnwydaplwavnggkatwfgievpfdlnallafefvamaaaegqrgdaggvvypggafdp
lgfakdssksgelklkeikngrlamvaflgfvaqhaatgkgpiaalgehlanpwganfat
ngisvpff

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijj1 (1:)
kagnwlpgsdapawlpddlpgnygfdplslgkepaslkrftesevihgrwamlgvagsla
vellgygnwydaplwavnggkatwfgievpfdlnallafefvamaaaegqrgdaggvvyp
ggafdplgfakdssksgelklkeikngrlamvaflgfvaqhaatgkgpiaalgehlanpw
ganfatngisvpf

  • Chain '3':
    Sequence, based on SEQRES records: (download) 
    >6ijj3 (3:)
mmltksaqaafsgkvarpakanrarlvcraeeksiakvdrskdqlyvgasqsslayldgs
lpgdfgfdplglldpvnsggfiepkwlqyseviharwamlgaagciapevlgaaglipda
tnikwfesgvippagsyngywadpytiffveivamqfaelrrlqdfrypgsmgqqyflgl
eaifkgsgdaaypggpffnlfnlgkteaamkelklkeikngrlamlamlgygaqavmtgk
gpfqnlvehladpvnnniltnfagrvsgssqpwrphgwwrrryrsvaalalirnrsvc

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijj3 (3:)
qlyvgasqsslayldgslpgdfgfdplglldpvnsggfiepkwlqyseviharwamlgaa
gciapevlgaaglipdatnikwfesgvippagsyngywadpytiffveivamqfaelrrl
qdfrypgsmgqqyflgleaifkgsgdaaypggpffnlfnlgkteaamkelklkeikngrl
amlamlgygaqavmtgkgpfqnlvehladpvnnniltnfag

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >6ijj4 (4:)
mysalipllssginaeymgvsrcsgkmafvlakssafgvaakpvsrrssvavkasavpen
vkearewidawksksggakrdaalpswmpgadlpgylngtlpgdfgfdplylgqdpvklk
wyaqaelmnarfamlavagilvpellsnigfswpgagvawydagkfeyfapasslfgvqm
llfawveirryqdfvkpgsanqdpiftnnklpdgnepgypggifdpfgwskgdikslklk
eikngrlamlafagfigqayttgttplknlsthladpwsttvwqndlarl

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijj4 (4:)
daalpswmpgadlpgylngtlpgdfgfdplylgqdpvklkwyaqaelmnarfamlavagi
lvpellsnigfswpgagvawydagkfeyfapasslfgvqmllfawveirryqdfvkpgsa
nqdpiftnnklpdgnepgypggifdpfgwskgdikslklkeikngrlamlafagfigqay
ttgttplknlsthladpwsttvwqndlarl

  • Chain '5':
    No sequence available.

  • Chain '6':
    No sequence available.

  • Chain '7':
    Sequence, based on SEQRES records: (download) 
    >6ijj7 (7:)
malsmiaqrragafsarqapravraqaavrpvwfpgnpppahldgslagdygfdplflgq
epqtlkwyvqaelvhgrfamlgaagiiltsigakvglgfpewydagkvvveknnidfptl
mviqfylmgwaetkrwydfknpgsqadgsflgfteefkglengypggrffdpmglsrgda
akyqeykqkevkngrlamiaclgfaaqyaatgkgpldnladhladpnhvnfatngvsipi
a

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijj7 (7:)
vrpvwfpgnpppahldgslagdygfdplflgqepqtlkwyvqaelvhgrfamlgaagiil
tsigakvglgfpewydagkvvveknnidfptlmviqfylmgwaetkrwydfknpgsqadg
sflgfteefkglengypggrffdpmglsrgdaakyqeykqkevkngrlamiaclgfaaqy
aatgkgpldnladhladpnhvnfatngvsipia

  • Chain '8':
    Sequence, based on SEQRES records: (download) 
    >6ijj8 (8:)
grqfaprflalclcrcclrtehgphspatmaltmkrsgvaarsassrksvvtcvarqswl
pgsqipahldtpaaqalagnfgfdplglgkdpvalrwyqqaelihcrtamagvagilipg
lltkagalnvpewydagkvaiensfapwgsllavqlflcgfveakrwqdirkpgsqgepg
sflgfeaslkgtselgypggpfdplglskeadkwadwklkevkngrlamlaflgfvaqky
atgagpvdnlaahlkdpwhvnyatngvslpfl

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijj8 (8:)
rqswlpgsqipahldtpaaqalagnfgfdplglgkdpvalrwyqqaelihcrtamagvag
ilipglltkagalnvpewydagkvaiensfapwgsllavqlflcgfveakrwqdirkpgs
qgepgsflgfeaslkgtselgypggpfdplglskeadkwadwklkevkngrlamlaflgf
vaqkyatgagpvdnlaahlkdpwhvnyatngvslp

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ijjA (A:)
mtistpereakkvkiavdrnpvetsfekwakpghfsrtlskgpntttwiwnlhadahdfd
shtsdleeisrkvfsahfgqlgiifiwlsgmyfhgarfsnyeawlsdpthikpsaqvvwp
ivgqeilngdvgggfqgiqitsgffqlwrasgitselqlyttaigglvmaaamffagwfh
yhkaapklewfqnvesmlnhhlggllglgslawaghqihvslpvnklldagvdpkeiplp
hdlllnraimadlypsfakgiapfftlnwseysdfltfkgglnpvtgglwlsdtahhhva
iavlflvaghmyrtnwgighsmkeileahrgpftgeghvglyeilttswhaqlainlalf
gslsiivahhmyamppypylatdygtqlslfthhtwiggfcivgagahaaifmvrdydpt
nnynnlldrvirhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdtaiqlq
pvfaqwiqnthflapqltapnalaatsltwggdlvavggkvammpislgtsdfmvhhiha
ftihvtvlillkgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmy
nslsivifhfswkmqsdvwgtvtasgvshitggnfaqsantingwlrdflwaqssqviqs
ygsalsaygliflgahfvwafslmflfsgrgywqeliesivwahnklkvapaiqpralsi
tqgravgvahyllggiattwsfflariisvg

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijjA (A:)
kkvkiavdrnpvetsfekwakpghfsrtlskgpntttwiwnlhadahdfdshtsdleeis
rkvfsahfgqlgiifiwlsgmyfhgarfsnyeawlsdpthikpsaqvvwpivgqeilngd
vgggfqgiqitsgffqlwrasgitselqlyttaigglvmaaamffagwfhyhkaapklew
fqnvesmlnhhlggllglgslawaghqihvslpvnklldagvdpkeiplphdlllnraim
adlypsfakgiapfftlnwseysdfltfkgglnpvtgglwlsdtahhhvaiavlflvagh
myrtnwgighsmkeileahrgpftgeghvglyeilttswhaqlainlalfgslsiivahh
myamppypylatdygtqlslfthhtwiggfcivgagahaaifmvrdydptnnynnlldrv
irhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdtaiqlqpvfaqwiqnt
hflapqltapnalaatsltwggdlvavggkvammpislgtsdfmvhhihaftihvtvlil
lkgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynslsivifhf
swkmqsdvwgtvtasgvshitggnfaqsantingwlrdflwaqssqviqsygsalsaygl
iflgahfvwafslmflfsgrgywqeliesivwahnklkvapaiqpralsitqgravgvah
yllggiattwsfflariisvg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ijjB (B:)
matklfpkfsqglaqdpttrriwyglamahdfeshdgmteenlyqkifashfgqlsiifl
wtsgnlfhvawqgnfeqwvtdpvhirpiahaiwdphfgqpaveaftrggasgpvnistsg
vyqwwytigmrtnqdlyvgsvflalvsaiflfagwlhlqpnfqpslswfkdaesrlnhhl
sglfgvsslawtghlvhvaipesrgqhvgwdnflsvlphpqgltpfftgnwaayaqspdt
ashvfgtaqgsgqailtflggfhpqtqslwltdmahhhlaiavifivaghmyrtnfgigh
rmqaileahtppsgslgaghkglfdtvnnslhfqlglalasvgtitslvaqhmyslppya
fqaidfttqaalythhqyiagfimcgafahgaiffirdydpeqnkgnvlarmldhkeali
shlswvslflgfhtlglyvhndvmqafgtpekqiliepvfaqwiqaahgkalygfdflls
sktsaafangqslwlpgwldainnnqnslfltigpgdflvhhaialglhtttlilvkgal
dargsklmpdkkdfgysfpcdgpgrggtcdisaydafylavfwmlntigwvtfywhwkhl
tlwqgnvaqfdesstylmgwlrdylwlnssqlingynpfgmnslsvwawtflfghliyat
gfmfliswrgywqelietlvwahektplanlvywkdkpvalsivqarlvglahfsvgyif
tyaafliastsgrfg

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijjB (B:)
klfpkfsqglaqdpttrriwyglamahdfeshdgmteenlyqkifashfgqlsiiflwts
gnlfhvawqgnfeqwvtdpvhirpiahaiwdphfgqpaveaftrggasgpvnistsgvyq
wwytigmrtnqdlyvgsvflalvsaiflfagwlhlqpnfqpslswfkdaesrlnhhlsgl
fgvsslawtghlvhvaipesrgqhvgwdnflsvlphpqgltpfftgnwaayaqspdtash
vfgtaqgsgqailtflggfhpqtqslwltdmahhhlaiavifivaghmyrtnfgighrmq
aileahtppsgslgaghkglfdtvnnslhfqlglalasvgtitslvaqhmyslppyafqa
idfttqaalythhqyiagfimcgafahgaiffirdydpeqnkgnvlarmldhkealishl
swvslflgfhtlglyvhndvmqafgtpekqiliepvfaqwiqaahgkalygfdfllsskt
saafangqslwlpgwldainnnqnslfltigpgdflvhhaialglhtttlilvkgaldar
gsklmpdkkdfgysfpcdgpgrggtcdisaydafylavfwmlntigwvtfywhwkhltlw
qgnvaqfdesstylmgwlrdylwlnssqlingynpfgmnslsvwawtflfghliyatgfm
fliswrgywqelietlvwahektplanlvywkdkpvalsivqarlvglahfsvgyiftya
afliastsgrf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ijjC (C:)
mahivkiydtcigctqcvracpldvlemvpwdgckasqmasaprtedcvgckrcetacpt
dflsvrvylgsestrsmglsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijjC (C:)
ahivkiydtcigctqcvracpldvlemvpwdgckasqmasaprtedcvgckrcetacptd
flsvrvylgsestrsmglsy

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ijjD (D:)
mavmmrtqapaatrassrvavaarpaarravvvraeaeaapaaakkaaekpawtvptlnp
dtpspifggstggllrkaqteefyvitweakkeqifemptggaaimrqgpnllkfgkkeq
clalttqlrnkfkltpcfyrvfpdgkvqylhpadgvypekvnagrvganqnmrrigqnvn
pikvkfsgrmmspaei

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijjD (D:)
awtvptlnpdtpspifggstggllrkaqteefyvitweakkeqifemptggaaimrqgpn
llkfgkkeqclalttqlrnkfkltpcfyrvfpdgkvqylhpadgvypekvnagrvganqn
mrrigqnvnpikvkfsgrmmspae

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6ijjE (E:)
mvyaiphvlcvdttachewyqrrvhggfqprprvtlrlssphqnrkmqalssrvniaakp
qraqrlvvraeevkaapkkevgpkrgslvkilrpesywfnqvgkvvsvdqsgvrypvvvr
fenqnyagvttnnyaldevvaak

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijjE (E:)
kevgpkrgslvkilrpesywfnqvgkvvsvdqsgvrypvvvrfenqnyagvttnnyalde
vvaa

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6ijjF (F:)
maltmrnpavkassrvapssrralrvacqaqknetaskvgtalaasalaaavslsapsaa
madiagltpcseskayaklekkelktlekrlkqyeadsapavalkatmertkarfanyak
agllcgndglphliadpglalkyghagevfiptfgflyvagyigyvgrqyliavkgeakp
tdkeiiidvplatklawqgagwplaavqelqrgtllekeenitvspr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijjF (F:)
diagltpcseskayaklekkelktlekrlkqyeadsapavalkatmertkarfanyakag
llcgndglphliadpglalkyghagevfiptfgflyvagyigyvgrqyliavkgeakptd
keiiidvplatklawqgagwplaavqelqrgtllekeenitvsp

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ijjJ (J:)
mkdfttylstapviatiwftftagllieinryfpdplvfsf

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6ijjL (L:)
mptkgspltglitwaflvsaahtrtvdtrprprgiwrraavarrpveeriatgsslahty
hkmavamrsstglrataarrqmplglgrvstvrvcaadtkkaqvispvngdpfvgmletp
vtsapivatylsnlpayrtgvapvlrgveiglahgfllagpfiklgplrnvpetaeiags
lsaaglvlilalclsiygsaqfqstpsigvktlsgrsvardplfsadgwsefaagflvgg
eagvawayvctqilpyys

    Sequence, based on observed residues (ATOM records): (download) 
    >6ijjL (L:)
vatylsnlpayrtgvapvlrgveiglahgfllagpfiklgplrnvpetaeiagslsaagl
vlilalclsiygsaqflfsadgwsefaagflvggeagvawayvct

  • Chain 'a':
    No sequence available.