Lineage for Species: Thermococcus kodakaraensis [TaxId: 311400]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2088460Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families) (S)
    automatically mapped to Pfam PF00016
  5. 2088461Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 protein domains)
    N-terminal domain is alpha+beta
  6. 2088462Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (12 species)
  7. 2088634Species Thermococcus kodakaraensis [TaxId:311400] [69404] (2 PDB entries)

PDB entries in Species: Thermococcus kodakaraensis [TaxId: 311400]:

  1. Domain(s) for 1geh:
    1. 2088645Domain d1geha1: 1geh A:137-443 [65181]
      Other proteins in same PDB: d1geha2, d1gehb2, d1gehc2, d1gehd2, d1gehe2
      complexed with so4
    2. 2088646Domain d1gehb1: 1geh B:137-443 [65183]
      Other proteins in same PDB: d1geha2, d1gehb2, d1gehc2, d1gehd2, d1gehe2
      complexed with so4
    3. 2088647Domain d1gehc1: 1geh C:137-443 [65185]
      Other proteins in same PDB: d1geha2, d1gehb2, d1gehc2, d1gehd2, d1gehe2
      complexed with so4
    4. 2088648Domain d1gehd1: 1geh D:137-443 [65187]
      Other proteins in same PDB: d1geha2, d1gehb2, d1gehc2, d1gehd2, d1gehe2
      complexed with so4
    5. 2088649Domain d1gehe1: 1geh E:137-443 [65189]
      Other proteins in same PDB: d1geha2, d1gehb2, d1gehc2, d1gehd2, d1gehe2
      complexed with so4
  2. Domain(s) for 3a12:
    1. 2088635Domain d3a12a2: 3a12 A:137-444 [208042]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    2. 2088636Domain d3a12b2: 3a12 B:137-444 [208044]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    3. 2088637Domain d3a12c2: 3a12 C:137-444 [208046]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    4. 2088638Domain d3a12d2: 3a12 D:137-444 [208048]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    5. 2088639Domain d3a12e2: 3a12 E:137-444 [208050]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    6. 2088640Domain d3a12f2: 3a12 F:137-444 [208052]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    7. 2088641Domain d3a12g2: 3a12 G:137-444 [208054]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    8. 2088642Domain d3a12h2: 3a12 H:137-444 [208056]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    9. 2088643Domain d3a12i2: 3a12 I:137-444 [208058]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg
    10. 2088644Domain d3a12j2: 3a12 J:137-444 [208060]
      Other proteins in same PDB: d3a12a1, d3a12b1, d3a12c1, d3a12d1, d3a12e1, d3a12f1, d3a12g1, d3a12h1, d3a12i1, d3a12j1
      automated match to d1geha1
      complexed with cap, mg

More info for Species Thermococcus kodakaraensis [TaxId:311400] from c.1.14.1 Ribulose 1,5-bisphosphate carboxylase-oxygenase

Timeline for Species Thermococcus kodakaraensis [TaxId:311400] from c.1.14.1 Ribulose 1,5-bisphosphate carboxylase-oxygenase: