PDB entry 1geh

View 1geh on RCSB PDB site
Description: crystal structure of archaeal rubisco (ribulose 1,5-bisphosphate carboxylase/oxygenase)
Class: lyase
Keywords: Pentagonal toroid decamer, RUBISCO, LYASE
Deposited on 2000-11-13, released 2001-12-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.224
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase
    Species: Thermococcus kodakarensis [TaxId:69014]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1geha1, d1geha2
  • Chain 'B':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase
    Species: Thermococcus kodakarensis [TaxId:69014]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gehb1, d1gehb2
  • Chain 'C':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase
    Species: Thermococcus kodakarensis [TaxId:69014]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gehc1, d1gehc2
  • Chain 'D':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase
    Species: Thermococcus kodakarensis [TaxId:69014]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gehd1, d1gehd2
  • Chain 'E':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase
    Species: Thermococcus kodakarensis [TaxId:69014]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gehe1, d1gehe2
  • Heterogens: SO4

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1gehA (A:)
mvekfdtiydyyvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlyp
wyeqerwadlsakaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkg
lrledlyfpeklirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydl
lsngadymkddenltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqr
levladlglkhamvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfv
laklyrligidqlhvgtagagkleggkwdviqnarilreshykpdendvfhleqkfysik
aafptssgglhpgniqpviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgip
ldeyakthkelaralekwghvtpv

    Sequence, based on observed residues (ATOM records): (download) 
    >1gehA (A:)
yvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlypwyeqerwadls
akaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkglrledlyfpek
lirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydllsngadymkdd
enltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqrlevladlglkh
amvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfvlaklyrligid
qlhvgtaeggkwdviqnarilreshykpdendvfhleqkfysikaafptssgglhpgniq
pviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgipldeyakthkelarale
kwghvtp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1gehB (B:)
mvekfdtiydyyvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlyp
wyeqerwadlsakaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkg
lrledlyfpeklirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydl
lsngadymkddenltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqr
levladlglkhamvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfv
laklyrligidqlhvgtagagkleggkwdviqnarilreshykpdendvfhleqkfysik
aafptssgglhpgniqpviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgip
ldeyakthkelaralekwghvtpv

    Sequence, based on observed residues (ATOM records): (download) 
    >1gehB (B:)
yvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlypwyeqerwadls
akaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkglrledlyfpek
lirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydllsngadymkdd
enltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqrlevladlglkh
amvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfvlaklyrligid
qlhvgtaeggkwdviqnarilreshykpdendvfhleqkfysikaafptssgglhpgniq
pviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgipldeyakthkelarale
kwghvtp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1gehC (C:)
mvekfdtiydyyvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlyp
wyeqerwadlsakaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkg
lrledlyfpeklirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydl
lsngadymkddenltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqr
levladlglkhamvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfv
laklyrligidqlhvgtagagkleggkwdviqnarilreshykpdendvfhleqkfysik
aafptssgglhpgniqpviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgip
ldeyakthkelaralekwghvtpv

    Sequence, based on observed residues (ATOM records): (download) 
    >1gehC (C:)
yvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlypwyeqerwadls
akaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkglrledlyfpek
lirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydllsngadymkdd
enltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqrlevladlglkh
amvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfvlaklyrligid
qlhvgtaeggkwdviqnarilreshykpdendvfhleqkfysikaafptssgglhpgniq
pviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgipldeyakthkelarale
kwghvtp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1gehD (D:)
mvekfdtiydyyvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlyp
wyeqerwadlsakaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkg
lrledlyfpeklirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydl
lsngadymkddenltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqr
levladlglkhamvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfv
laklyrligidqlhvgtagagkleggkwdviqnarilreshykpdendvfhleqkfysik
aafptssgglhpgniqpviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgip
ldeyakthkelaralekwghvtpv

    Sequence, based on observed residues (ATOM records): (download) 
    >1gehD (D:)
yvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlypwyeqerwadls
akaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkglrledlyfpek
lirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydllsngadymkdd
enltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqrlevladlglkh
amvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfvlaklyrligid
qlhvgtaeggkwdviqnarilreshykpdendvfhleqkfysikaafptssgglhpgniq
pviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgipldeyakthkelarale
kwghvtp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1gehE (E:)
mvekfdtiydyyvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlyp
wyeqerwadlsakaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkg
lrledlyfpeklirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydl
lsngadymkddenltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqr
levladlglkhamvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfv
laklyrligidqlhvgtagagkleggkwdviqnarilreshykpdendvfhleqkfysik
aafptssgglhpgniqpviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgip
ldeyakthkelaralekwghvtpv

    Sequence, based on observed residues (ATOM records): (download) 
    >1gehE (E:)
yvdkgyepskkrdiiavfrvtpaegytieqaagavaaesstgtwttlypwyeqerwadls
akaydfhdmgdgswivriaypfhafeeanlpgllasiagnifgmkrvkglrledlyfpek
lirefdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydllsngadymkdd
enltspwynrfeeraeimakiidkvenetgekktwfanitadllemeqrlevladlglkh
amvdvvitgwgalryirdlaadyglaihghramhaaftrnpyhgismfvlaklyrligid
qlhvgtaeggkwdviqnarilreshykpdendvfhleqkfysikaafptssgglhpgniq
pviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgipldeyakthkelarale
kwghvtp