SCOPe 2.08: Protein: Prolyl-tRNA synthetase (ProRS)

Lineage for Protein: Prolyl-tRNA synthetase (ProRS)

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
contains large mixed beta-sheet
Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families)
Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain [55682] (16 proteins)
Protein Prolyl-tRNA synthetase (ProRS) [64347] (3 species)

Species:

Methanocaldococcus jannaschii [TaxId:2190] [90010] (1 PDB entry)
- Domains for 1nj8:
  1. Domain d1nj8a3: 1nj8 A:1-267 [85771]
    Other proteins in same PDB: d1nj8a1, d1nj8a2, d1nj8a4, d1nj8b1, d1nj8b2, d1nj8b4, d1nj8c1, d1nj8c2, d1nj8c4, d1nj8d1, d1nj8d2, d1nj8d4
  2. Domain d1nj8b3: 1nj8 B:1-267 [85774]
    Other proteins in same PDB: d1nj8a1, d1nj8a2, d1nj8a4, d1nj8b1, d1nj8b2, d1nj8b4, d1nj8c1, d1nj8c2, d1nj8c4, d1nj8d1, d1nj8d2, d1nj8d4
  3. Domain d1nj8c3: 1nj8 C:1-267 [85777]
    Other proteins in same PDB: d1nj8a1, d1nj8a2, d1nj8a4, d1nj8b1, d1nj8b2, d1nj8b4, d1nj8c1, d1nj8c2, d1nj8c4, d1nj8d1, d1nj8d2, d1nj8d4
  4. Domain d1nj8d3: 1nj8 D:1-267 [85780]
    Other proteins in same PDB: d1nj8a1, d1nj8a2, d1nj8a4, d1nj8b1, d1nj8b2, d1nj8b4, d1nj8c1, d1nj8c2, d1nj8c4, d1nj8d1, d1nj8d2, d1nj8d4
Methanothermobacter thermautotrophicus [TaxId:145262] [90009] (4 PDB entries)
1. Domain for 1nj1:
  - Domain d1nj1a3: 1nj1 A:19-283 [85757]
    Other proteins in same PDB: d1nj1a1, d1nj1a2
    protein/RNA complex; complexed with 5ca, mg, zn
2. Domain for 1nj2:
  - Domain d1nj2a3: 1nj2 A:19-283 [85760]
    Other proteins in same PDB: d1nj2a1, d1nj2a2
    complexed with mg, zn
3. Domain for 1nj5:
  - Domain d1nj5a3: 1nj5 A:19-283 [85764]
    Other proteins in same PDB: d1nj5a1, d1nj5a2
    protein/RNA complex; complexed with mg, p5a, zn
4. Domain for 1nj6:
  - Domain d1nj6a3: 1nj6 A:19-283 [85767]
    Other proteins in same PDB: d1nj6a1, d1nj6a2
    protein/RNA complex; complexed with a5a, mg, zn
Thermus thermophilus [TaxId:274] [64348] (4 PDB entries)
1. Domains for 1h4q:
  1. Domain d1h4qa2: 1h4q A:5-276 [60599]
    Other proteins in same PDB: d1h4qa1, d1h4qa3, d1h4qb1, d1h4qb3
    protein/RNA complex; complexed with atp, pri, so4, zn
  2. Domain d1h4qb2: 1h4q B:5-276 [60602]
    Other proteins in same PDB: d1h4qa1, d1h4qa3, d1h4qb1, d1h4qb3
    protein/RNA complex; complexed with atp, pri, so4, zn
2. Domains for 1h4s:
  1. Domain d1h4sa2: 1h4s A:5-276 [60605]
    Other proteins in same PDB: d1h4sa1, d1h4sa3, d1h4sb1, d1h4sb3
    protein/RNA complex; complexed with psd, so4, zn
  2. Domain d1h4sb2: 1h4s B:5-276 [60608]
    Other proteins in same PDB: d1h4sa1, d1h4sa3, d1h4sb1, d1h4sb3
    protein/RNA complex; complexed with psd, so4, zn
3. Domains for 1h4t:
  1. Domain d1h4ta2: 1h4t A:5-276 [60611]
    Other proteins in same PDB: d1h4ta1, d1h4ta3, d1h4tb1, d1h4tb3, d1h4tc1, d1h4tc3, d1h4td1, d1h4td3
    protein/RNA complex; complexed with pro, zn
  2. Domain d1h4tb2: 1h4t B:5-276 [60614]
    Other proteins in same PDB: d1h4ta1, d1h4ta3, d1h4tb1, d1h4tb3, d1h4tc1, d1h4tc3, d1h4td1, d1h4td3
    protein/RNA complex; complexed with pro, zn
  3. Domain d1h4tc2: 1h4t C:5-276 [60617]
    Other proteins in same PDB: d1h4ta1, d1h4ta3, d1h4tb1, d1h4tb3, d1h4tc1, d1h4tc3, d1h4td1, d1h4td3
    protein/RNA complex; complexed with pro, zn
  4. Domain d1h4td2: 1h4t D:5-276 [60620]
    Other proteins in same PDB: d1h4ta1, d1h4ta3, d1h4tb1, d1h4tb3, d1h4tc1, d1h4tc3, d1h4td1, d1h4td3
    protein/RNA complex; complexed with pro, zn
4. Domains for 1hc7:
  1. Domain d1hc7a2: 1hc7 A:5-276 [60939]
    Other proteins in same PDB: d1hc7a1, d1hc7a3, d1hc7b1, d1hc7b3, d1hc7c1, d1hc7c3, d1hc7d1, d1hc7d3
    complexed with zn
  2. Domain d1hc7b2: 1hc7 B:5-276 [60942]
    Other proteins in same PDB: d1hc7a1, d1hc7a3, d1hc7b1, d1hc7b3, d1hc7c1, d1hc7c3, d1hc7d1, d1hc7d3
    complexed with zn
  3. Domain d1hc7c2: 1hc7 C:5-276 [60945]
    Other proteins in same PDB: d1hc7a1, d1hc7a3, d1hc7b1, d1hc7b3, d1hc7c1, d1hc7c3, d1hc7d1, d1hc7d3
    complexed with zn
  4. Domain d1hc7d2: 1hc7 D:5-276 [60948]
    Other proteins in same PDB: d1hc7a1, d1hc7a3, d1hc7b1, d1hc7b3, d1hc7c1, d1hc7c3, d1hc7d1, d1hc7d3
    complexed with zn

More info for Protein Prolyl-tRNA synthetase (ProRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Timeline for Protein Prolyl-tRNA synthetase (ProRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain:

Protein Prolyl-tRNA synthetase (ProRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain first appeared in SCOP 1.57, called Protein C-terminal domain of ProRS from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain
Protein Prolyl-tRNA synthetase (ProRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain appears in SCOPe 2.07