SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family d.58.1.5: Ferredoxin domains from multidomain proteins

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2172289Superfamily d.58.1: 4Fe-4S ferredoxins [54862] (7 families) (S)
  5. 2172425Family d.58.1.5: Ferredoxin domains from multidomain proteins [54884] (14 protein domains)
    members of this "family" may be more closely related to other ferredoxins than to each other

Protein Domains:

  1. 2172426Adenylylsulfate reductase B subunit [69726] (1 species)
    includes N-terminal partly folded tail
  2. 2172440Dihydropyrimidine dehydrogenase, C-terminal domain [54891] (1 species)
    includes linker from domain 4
  3. 2172462DsrA insert domain [160280] (2 species)
    1. 2172463Species Archaeoglobus fulgidus [TaxId:2234] [160282] (8 PDB entries)
      Uniprot Q59109 240-305
    2. 2172480Species Desulfovibrio vulgaris [TaxId:881] [160281] (1 PDB entry)
      Uniprot P45574 242-322
  4. 2172483DsrB insert domain [160277] (2 species)
    1. 2172484Species Archaeoglobus fulgidus [TaxId:2234] [160279] (9 PDB entries)
      Uniprot Q59110 197-261
    2. 2172503Species Desulfovibrio vulgaris [TaxId:881] [160278] (1 PDB entry)
      Uniprot P45575 209-277
  5. 2172506Fe-only hydrogenase larger subunit, N-domain [54887] (1 species)
  6. 2172510Fe-only hydrogenase, second domain [54885] (1 species)
  7. 2172516Formate dehydrogenase N, iron-sulfur (beta) subunit [75427] (1 species)
  8. 2172520NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 [143254] (1 species)
  9. 2172526NADH-quinone oxidoreductase chain 9, Nqo9 [143252] (1 species)
  10. 2172532Pyruvate-ferredoxin oxidoreductase, PFOR, domain V [54889] (1 species)
  11. 2172554Respiratory nitrate reductase 1 beta chain [102955] (2 species)
    1. 2172555Species Escherichia coli K-12 [TaxId:83333] [189178] (3 PDB entries)
    2. 2172559Species Escherichia coli [TaxId:562] [102956] (8 PDB entries)
      Uniprot P11349
  12. 2172569Transhydroxylase beta subunit, BthL, N-terminal domain [110948] (1 species)
  13. 2172607Tungsten containing formate dehydrogenase, small subunit [82664] (1 species)
  14. 2172611automated matches [254689] (1 species)
    not a true protein

More info for Family d.58.1.5: Ferredoxin domains from multidomain proteins

Timeline for Family d.58.1.5: Ferredoxin domains from multidomain proteins: