SCOPe 2.07: Family d.58.1.5: Ferredoxin domains from multidomain proteins

Lineage for Family d.58.1.5: Ferredoxin domains from multidomain proteins

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.1: 4Fe-4S ferredoxins [54862] (7 families)

5. Family d.58.1.5: Ferredoxin domains from multidomain proteins [54884] (14 proteins)
   members of this "family" may be more closely related to other ferredoxins than to each other

Proteins:

1. Adenylylsulfate reductase B subunit [69726] (1 species)
   includes N-terminal partly folded tail

   • Species Archaeoglobus fulgidus [TaxId:2234] [69727] (6 PDB entries)

2. Dihydropyrimidine dehydrogenase, C-terminal domain [54891] (1 species)
   includes linker from domain 4

   • Species Pig (Sus scrofa) [TaxId:9823] [54892] (9 PDB entries)

3. DsrA insert domain [160280] (2 species)

   1. Species Archaeoglobus fulgidus [TaxId:2234] [160282] (8 PDB entries)
      Uniprot Q59109 240-305

   2. Species Desulfovibrio vulgaris [TaxId:881] [160281] (1 PDB entry)
      Uniprot P45574 242-322

4. DsrB insert domain [160277] (2 species)

   1. Species Archaeoglobus fulgidus [TaxId:2234] [160279] (9 PDB entries)
      Uniprot Q59110 197-261

   2. Species Desulfovibrio vulgaris [TaxId:881] [160278] (1 PDB entry)
      Uniprot P45575 209-277

5. Fe-only hydrogenase larger subunit, N-domain [54887] (1 species)

   • Species Desulfovibrio desulfuricans [TaxId:876] [54888] (1 PDB entry)

6. Fe-only hydrogenase, second domain [54885] (1 species)

   • Species Clostridium pasteurianum [TaxId:1501] [54886] (7 PDB entries)

7. Formate dehydrogenase N, iron-sulfur (beta) subunit [75427] (1 species)

   • Species Escherichia coli [TaxId:562] [75428] (2 PDB entries)

8. NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 [143254] (1 species)

   • Species Thermus thermophilus [TaxId:274] [143255] (1 PDB entry)
     Uniprot Q56223 96-246

9. NADH-quinone oxidoreductase chain 9, Nqo9 [143252] (1 species)

   • Species Thermus thermophilus [TaxId:274] [143253] (1 PDB entry)
     Uniprot Q56224 26-179

10. Pyruvate-ferredoxin oxidoreductase, PFOR, domain V [54889] (1 species)

    • Species Desulfovibrio africanus [TaxId:873] [54890] (10 PDB entries)

11. Respiratory nitrate reductase 1 beta chain [102955] (2 species)

    1. Species Escherichia coli K-12 [TaxId:83333] [189178] (3 PDB entries)

    2. Species Escherichia coli [TaxId:562] [102956] (8 PDB entries)
       Uniprot P11349

12. Transhydroxylase beta subunit, BthL, N-terminal domain [110948] (1 species)

    • Species Pelobacter acidigallici [TaxId:35816] [110949] (6 PDB entries)
      Uniprot P80564

13. Tungsten containing formate dehydrogenase, small subunit [82664] (1 species)

    • Species Desulfovibrio gigas [TaxId:879] [82665] (1 PDB entry)

14. automated matches [254689] (2 species)
    not a true protein

    1. Species Desulfovibrio vulgaris [TaxId:882] [382175] (2 PDB entries)

    2. Species Thermus thermophilus HB8 [TaxId:300852] [255887] (3 PDB entries)

More info for Family d.58.1.5: Ferredoxin domains from multidomain proteins

Timeline for Family d.58.1.5: Ferredoxin domains from multidomain proteins:

• Family d.58.1.5: Ferredoxin domains from multidomain proteins first appeared (with stable ids) in SCOP 1.55
  
• Family d.58.1.5: Ferredoxin domains from multidomain proteins appears in SCOPe 2.06
  
• Family d.58.1.5: Ferredoxin domains from multidomain proteins appears in the current release, SCOPe 2.08