SCOPe 2.08: Species: Pyrococcus horikoshii [TaxId: 53953]

Lineage for Species: Pyrococcus horikoshii [TaxId: 53953]

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

Superfamily c.23.16: Class I glutamine amidotransferase-like [52317] (10 families)

conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures

Family c.23.16.2: DJ-1/PfpI [52325] (10 proteins)
contains a catalytic triad or dyad different from the class I GAT triad
Protein Intracellular protease [52326] (3 species)
Species Pyrococcus horikoshii [TaxId:53953] [52327] (3 PDB entries)

PDB entries in Species: Pyrococcus horikoshii [TaxId: 53953]:

Domain(s) for 1g2i:
1. Domain d1g2ia_: 1g2i A: [31438]
  complexed with so4
2. Domain d1g2ib_: 1g2i B: [31439]
  complexed with so4
3. Domain d1g2ic_: 1g2i C: [31440]
  complexed with so4
Domain(s) for 6f2f:
1. Domain d6f2fa_: 6f2f A: [358309]
  automated match to d1g2ia_
  complexed with 2ha, 7mt, so4, tb
2. Domain d6f2fb_: 6f2f B: [358310]
  automated match to d1g2ia_
  complexed with 2ha, 7mt, so4, tb
3. Domain d6f2fc_: 6f2f C: [358327]
  automated match to d1g2ia_
  complexed with 2ha, 7mt, so4, tb
Domain(s) for 6f2h:
1. Domain d6f2ha_: 6f2h A: [358244]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
2. Domain d6f2hb_: 6f2h B: [358252]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
3. Domain d6f2hc_: 6f2h C: [358253]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
4. Domain d6f2hd_: 6f2h D: [358250]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
5. Domain d6f2he_: 6f2h E: [358313]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
6. Domain d6f2hf_: 6f2h F: [358401]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
7. Domain d6f2hg_: 6f2h G: [358247]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
8. Domain d6f2hh_: 6f2h H: [358368]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
9. Domain d6f2hi_: 6f2h I: [358305]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
10. Domain d6f2hj_: 6f2h J: [358249]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
11. Domain d6f2hk_: 6f2h K: [358300]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb
12. Domain d6f2hl_: 6f2h L: [358319]
  automated match to d1g2ia_
  complexed with 7mt, iod, tb

More info for Species Pyrococcus horikoshii [TaxId:53953] from c.23.16.2 Intracellular protease

Timeline for Species Pyrococcus horikoshii [TaxId:53953] from c.23.16.2 Intracellular protease:

Species Pyrococcus horikoshii [TaxId:53953] from c.23.16.2 Intracellular protease first appeared (with stable ids) in SCOP 1.55, called Species Archaea (Pyrococcus horikoshii) [TaxId:53953] from c.23.16.2 Intracellular protease
Species Pyrococcus horikoshii [TaxId:53953] from c.23.16.2 Intracellular protease appears in SCOPe 2.07