SCOPe 2.04: Protein: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)

Lineage for Protein: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.85: beta-clip [51268] (7 superfamilies)
double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
Superfamily b.85.4: dUTPase-like [51283] (2 families)
forms tight trimer through an additional beta-sheet in each subunit
subunit beta-sheets are orthogonally packed around the three-fold axis
Family b.85.4.1: dUTPase-like [51284] (5 proteins)
Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) [51285] (7 species)

Species:

Equine infectious anemia virus [TaxId:11665] [51288] (2 PDB entries)
1. Domain for 1duc:
  - Domain d1duca_: 1duc A: [28372]
    complexed with dud, sr
2. Domain for 1dun:
  - Domain d1duna_: 1dun A: [28371]
Escherichia coli [TaxId:562] [51286] (10 PDB entries)
Uniprot P06968
1. Domain for 1dud:
  - Domain d1duda_: 1dud A: [28352]
    complexed with dud
2. Domain for 1dup:
  - Domain d1dupa_: 1dup A: [28351]
3. Domain for 1eu5:
  - Domain d1eu5a_: 1eu5 A: [28350]
    complexed with gol
4. Domain for 1euw:
  - Domain d1euwa_: 1euw A: [28349]
    complexed with emc, gol
5. Domain for 1rn8:
  - Domain d1rn8a_: 1rn8 A: [105020]
    complexed with act, dup, mg, trs
6. Domain for 1rnj:
  - Domain d1rnja_: 1rnj A: [105021]
    complexed with dup, mg, trs; mutant
7. Domain for 1seh:
  - Domain d1seha_: 1seh A: [105454]
    complexed with trs, ump
8. Domain for 1syl:
  - Domain d1syla_: 1syl A: [106117]
    complexed with dut, mg, trs; mutant
9. Domain for 2hr6:
  - Domain d2hr6a_: 2hr6 A: [147375]
    automated match to d1rn8a_
    complexed with dud, edo, mn
10. Domain for 2hrm:
  - Domain d2hrma_: 2hrm A: [147378]
    automated match to d1rn8a_
    complexed with edo, uc5
Feline immunodeficiency virus [TaxId:11673] [51287] (8 PDB entries)
1. Domains for 1dut:
  1. Domain d1duta_: 1dut A: [28355]
    complexed with mg
  2. Domain d1dutb_: 1dut B: [28356]
    complexed with mg
2. Domains for 1f7d:
  1. Domain d1f7da_: 1f7d A: [28353]
    complexed with mg
  2. Domain d1f7db_: 1f7d B: [28354]
    complexed with mg
3. Domains for 1f7k:
  1. Domain d1f7ka_: 1f7k A: [28361]
    complexed with mg, ump
  2. Domain d1f7kb_: 1f7k B: [28362]
    complexed with mg, ump
4. Domains for 1f7n:
  1. Domain d1f7na_: 1f7n A: [28366]
    complexed with mg, ump
  2. Domain d1f7nb_: 1f7n B: [28367]
    complexed with mg, ump
5. Domains for 1f7o:
  1. Domain d1f7oa_: 1f7o A: [28357]
  2. Domain d1f7ob_: 1f7o B: [28358]
  3. Domain d1f7oc_: 1f7o C: [28359]
6. Domains for 1f7p:
  1. Domain d1f7pa_: 1f7p A: [28363]
    complexed with udp
  2. Domain d1f7pb_: 1f7p B: [28364]
    complexed with udp
  3. Domain d1f7pc_: 1f7p C: [28365]
    complexed with udp
7. Domains for 1f7q:
  1. Domain d1f7qa_: 1f7q A: [28368]
    complexed with dut
  2. Domain d1f7qb_: 1f7q B: [28369]
    complexed with dut
  3. Domain d1f7qc_: 1f7q C: [28370]
    complexed with dut
8. Domain for 1f7r:
  - Domain d1f7ra_: 1f7r A: [28360]
    complexed with mg, udp
Human (Homo sapiens) [TaxId:9606] [102010] (2 PDB entries)
1. Domains for 1q5h:
  1. Domain d1q5ha_: 1q5h A: [95893]
    protein/DNA complex; complexed with dud, mg
  2. Domain d1q5hb_: 1q5h B: [95894]
    protein/DNA complex; complexed with dud, mg
  3. Domain d1q5hc_: 1q5h C: [95895]
    protein/DNA complex; complexed with dud, mg
2. Domains for 1q5u:
  1. Domain d1q5ux_: 1q5u X: [95934]
  2. Domain d1q5uy_: 1q5u Y: [95935]
  3. Domain d1q5uz_: 1q5u Z: [95936]
Malaria parasite (Plasmodium falciparum) [TaxId:5833] [141654] (1 PDB entry)
Uniprot Q8II92 1-159
- Domain for 1vyq:
  - Domain d1vyqa1: 1vyq A:1-159 [120548]
    Other proteins in same PDB: d1vyqb_, d1vyqc_
    complexed with dux
Mycobacterium tuberculosis, rv2697c [TaxId:1773] [82213] (8 PDB entries)
1. Domain for 1mq7:
  - Domain d1mq7a_: 1mq7 A: [79404]
    structural genomics
    CASP5
    complexed with trs
2. Domain for 1six:
  - Domain d1sixa_: 1six A: [98892]
    complexed with dup, mg, trs
3. Domains for 1sjn:
  1. Domain d1sjna_: 1sjn A: [98896]
    complexed with dup, mg, no3, trs
  2. Domain d1sjnb_: 1sjn B: [98897]
    complexed with dup, mg, no3, trs
  3. Domain d1sjnc_: 1sjn C: [98898]
    complexed with dup, mg, no3, trs
4. Domains for 1slh:
  1. Domain d1slha_: 1slh A: [98910]
    complexed with dud, mg, trs
  2. Domain d1slhb_: 1slh B: [98911]
    complexed with dud, mg, trs
  3. Domain d1slhc_: 1slh C: [98912]
    complexed with dud, mg, trs
5. Domains for 1sm8:
  1. Domain d1sm8a_: 1sm8 A: [98917]
    complexed with cr, dut, no3, trs
  2. Domain d1sm8b_: 1sm8 B: [98918]
    complexed with cr, dut, no3, trs
  3. Domain d1sm8c_: 1sm8 C: [98919]
    complexed with cr, dut, no3, trs
6. Domains for 1smc:
  1. Domain d1smca_: 1smc A: [98920]
    complexed with dut, no3, trs
  2. Domain d1smcb_: 1smc B: [98921]
    complexed with dut, no3, trs
  3. Domain d1smcc_: 1smc C: [98922]
    complexed with dut, no3, trs
7. Domains for 1snf:
  1. Domain d1snfa_: 1snf A: [98927]
    complexed with mg, no3, trs, ump
  2. Domain d1snfb_: 1snf B: [98928]
    complexed with mg, no3, trs, ump
  3. Domain d1snfc_: 1snf C: [98929]
    complexed with mg, no3, trs, ump
8. Domain for 2py4:
  - Domain d2py4a_: 2py4 A: [139775]
    automated match to d1sixa_
    complexed with dup, mg, trs
Vaccinia virus [TaxId:10245] [187961] (5 PDB entries)
1. Domains for 2okb:
  1. Domain d2okba_: 2okb A: [166732]
    automated match to d1q5hb_
    complexed with cl, edo, so4
  2. Domain d2okbb_: 2okb B: [166733]
    automated match to d1q5hb_
    complexed with cl, edo, so4
  3. Domain d2okbc_: 2okb C: [166734]
    automated match to d1q5hb_
    complexed with cl, edo, so4
2. Domains for 2okd:
  1. Domain d2okda_: 2okd A: [166735]
    automated match to d1q5hb_
    complexed with cl, edo
  2. Domain d2okdb_: 2okd B: [166736]
    automated match to d1q5hb_
    complexed with cl, edo
  3. Domain d2okdc_: 2okd C: [166737]
    automated match to d1q5hb_
    complexed with cl, edo
3. Domains for 2oke:
  1. Domain d2okea_: 2oke A: [166738]
    automated match to d1q5hb_
    complexed with cl, dup, edo, mg
  2. Domain d2okeb_: 2oke B: [166739]
    automated match to d1q5hb_
    complexed with cl, dup, edo, mg
  3. Domain d2okec_: 2oke C: [166740]
    automated match to d1q5hb_
    complexed with cl, dup, edo, mg
4. Domains for 2ol0:
  1. Domain d2ol0a_: 2ol0 A: [166753]
    automated match to d1q5hb_
    complexed with cl, dud, edo, mg
  2. Domain d2ol0b_: 2ol0 B: [166754]
    automated match to d1q5hb_
    complexed with cl, dud, edo, mg
  3. Domain d2ol0c_: 2ol0 C: [166755]
    automated match to d1q5hb_
    complexed with cl, dud, edo, mg
5. Domains for 2ol1:
  1. Domain d2ol1a_: 2ol1 A: [166756]
    automated match to d1q5hb_
    complexed with cl, edo, ump
  2. Domain d2ol1b_: 2ol1 B: [166757]
    automated match to d1q5hb_
    complexed with cl, edo, ump
  3. Domain d2ol1c_: 2ol1 C: [166758]
    automated match to d1q5hb_
    complexed with cl, edo, ump

More info for Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) from b.85.4.1: dUTPase-like

Timeline for Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) from b.85.4.1: dUTPase-like:

Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) from b.85.4.1: dUTPase-like first appeared (with stable ids) in SCOP 1.55, called Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) from b.85.4.1: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) from b.85.4.1: dUTPase-like appears in SCOPe 2.03
Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) from b.85.4.1: dUTPase-like appears in SCOPe 2.05
Protein Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) from b.85.4.1: dUTPase-like appears in the current release, SCOPe 2.08