Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1684037Fold d.175: Penicillin binding protein dimerisation domain [56518] (1 superfamily)
    unusual fold
  4. 1684038Superfamily d.175.1: Penicillin binding protein dimerisation domain [56519] (2 families) (S)
    automatically mapped to Pfam PF03717
  5. 1684066Family d.175.1.0: automated matches [227232] (1 protein)
    not a true family
  6. 1684067Protein automated matches [226981] (7 species)
    not a true protein

Species:

  1. 1684068Atopobium parvulum [TaxId:521095] [237724] (1 PDB entry)
  2. 1684070Neisseria gonorrhoeae [TaxId:485] [225540] (2 PDB entries)
    1. Domains for 3equ:
      1. 1684071Domain d3equa1: 3equ A:63-237 [209614]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
      2. 1684072Domain d3equb1: 3equ B:65-237 [209616]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
    2. Domains for 3eqv:
      1. 1684073Domain d3eqva1: 3eqv A:53-237 [232067]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d3equa1
        complexed with gol, so4; mutant
      2. 1684074Domain d3eqvb1: 3eqv B:66-237 [232066]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d4kqoa1
        complexed with gol, so4; mutant
  3. 1684075Pseudomonas aeruginosa [TaxId:1279008] [257303] (2 PDB entries)
    1. Domain for 4ool:
    2. Domain for 4oom:
  4. 1684078Pseudomonas aeruginosa [TaxId:208964] [228776] (12 PDB entries)
    1. Domain for 3oc2:
    2. Domain for 3ocl:
    3. Domain for 3ocn:
    4. Domain for 3pbn:
    5. Domain for 3pbo:
    6. Domain for 3pbq:
    7. Domain for 3pbr:
    8. Domain for 3pbs:
    9. Domain for 3pbt:
    10. Domains for 4kqo:
      1. 1684091Domain d4kqoa1: 4kqo A:50-221 [228777]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d3equa1
        complexed with cl, gol, imd, jpp
      2. 1684092Domain d4kqob1: 4kqo B:58-221 [235207]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d4kqoa1
        complexed with cl, gol, imd, jpp
    11. Domains for 4kqq:
      1. 1684088Domain d4kqqa1: 4kqq A:51-221 [235213]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 1684089Domain d4kqqb1: 4kqq B:57-221 [235209]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
    12. Domains for 4kqr:
      1. 1684086Domain d4kqra1: 4kqr A:51-221 [235211]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 1684087Domain d4kqrb1: 4kqr B:53-221 [235215]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
  5. 1684094Pseudomonas aeruginosa [TaxId:287] [234430] (2 PDB entries)
    1. Domain for 4fsf:
    2. Domain for 4l0l:
  6. 1684097Staphylococcus aureus [TaxId:1280] [256159] (3 PDB entries)
    1. Domains for 3zg5:
      1. 1684098Domain d3zg5a2: 3zg5 A:139-327 [250786]
        Other proteins in same PDB: d3zg5a1, d3zg5a3, d3zg5b1, d3zg5b3
        automated match to d1vqqa2
        complexed with cd, cl
      2. 1684099Domain d3zg5b2: 3zg5 B:139-327 [250789]
        Other proteins in same PDB: d3zg5a1, d3zg5a3, d3zg5b1, d3zg5b3
        automated match to d1vqqa2
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 1684100Domain d4bl2a2: 4bl2 A:139-327 [256552]
        Other proteins in same PDB: d4bl2a1, d4bl2a3, d4bl2b1, d4bl2b3
        automated match to d1vqqa2
        complexed with cd, cl; mutant
      2. 1684101Domain d4bl2b2: 4bl2 B:139-327 [256555]
        Other proteins in same PDB: d4bl2a1, d4bl2a3, d4bl2b1, d4bl2b3
        automated match to d1vqqa2
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 1684102Domain d4bl3a2: 4bl3 A:139-327 [256558]
        Other proteins in same PDB: d4bl3a1, d4bl3a3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
      2. 1684103Domain d4bl3b2: 4bl3 B:139-327 [259320]
        Other proteins in same PDB: d4bl3b1, d4bl3b3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
  7. 1684104Staphylococcus aureus [TaxId:158878] [256156] (3 PDB entries)
    1. Domains for 3zfz:
      1. 1684105Domain d3zfza2: 3zfz A:139-327 [250774]
        Other proteins in same PDB: d3zfza1, d3zfza3, d3zfzb1, d3zfzb3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
      2. 1684106Domain d3zfzb2: 3zfz B:139-327 [250777]
        Other proteins in same PDB: d3zfza1, d3zfza3, d3zfzb1, d3zfzb3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 1684108Domain d3zg0a2: 3zg0 A:139-327 [250780]
        Other proteins in same PDB: d3zg0a1, d3zg0a3, d3zg0b1, d3zg0b3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
      2. 1684109Domain d3zg0b2: 3zg0 B:139-327 [250783]
        Other proteins in same PDB: d3zg0a1, d3zg0a3, d3zg0b1, d3zg0b3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
    3. Domain for 4cpk:

More info for Protein automated matches from d.175.1.0: automated matches

Timeline for Protein automated matches from d.175.1.0: automated matches: