SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.353: AMPKBI-like [160218] (1 superfamily)
comprises 3 short helices and 3-stranded meander beta-sheet; makes extensive intermolecular interactions
Superfamily d.353.1: AMPKBI-like [160219] (1 family)
automatically mapped to Pfam PF04739
Family d.353.1.1: AMPKBI-like [160220] (4 proteins)
Pfam PF04739; 5'-AMP-activated protein kinase, beta subunit, complex-interacting region
Protein automated matches [190789] (2 species)
not a true protein

Species:

Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [188232] (4 PDB entries)
1. Domains for 2qr1:
  1. Domain d2qr1b_: 2qr1 B: [151275]
    Other proteins in same PDB: d2qr1a_, d2qr1c_, d2qr1e1, d2qr1e2, d2qr1g1, d2qr1g2, d2qr1g3
    automated match to d2ooxb1
    complexed with adp
  2. Domain d2qr1d_: 2qr1 D: [151277]
    Other proteins in same PDB: d2qr1a_, d2qr1c_, d2qr1e1, d2qr1e2, d2qr1g1, d2qr1g2, d2qr1g3
    automated match to d2ooxb1
    complexed with adp
2. Domains for 2qrc:
  1. Domain d2qrcb_: 2qrc B: [151283]
    Other proteins in same PDB: d2qrca_, d2qrcc_, d2qrce1, d2qrce2, d2qrcg1, d2qrcg2, d2qrcg3
    automated match to d2ooxb1
    complexed with adp, amp
  2. Domain d2qrcd_: 2qrc D: [151285]
    Other proteins in same PDB: d2qrca_, d2qrcc_, d2qrce1, d2qrce2, d2qrcg1, d2qrcg2, d2qrcg3
    automated match to d2ooxb1
    complexed with adp, amp
3. Domains for 2qrd:
  1. Domain d2qrdb_: 2qrd B: [151287]
    Other proteins in same PDB: d2qrda_, d2qrdc_, d2qrde1, d2qrde2, d2qrde3, d2qrdg1, d2qrdg2, d2qrdg3
    automated match to d2ooxb1
    complexed with adp, atp
  2. Domain d2qrdd_: 2qrd D: [151289]
    Other proteins in same PDB: d2qrda_, d2qrdc_, d2qrde1, d2qrde2, d2qrde3, d2qrdg1, d2qrdg2, d2qrdg3
    automated match to d2ooxb1
    complexed with adp, atp
4. Domains for 2qre:
  1. Domain d2qreb_: 2qre B: [151291]
    Other proteins in same PDB: d2qrea_, d2qrec_, d2qree1, d2qree2, d2qree3, d2qreg1, d2qreg2, d2qreg3
    automated match to d2ooxb1
    complexed with amz
  2. Domain d2qred_: 2qre D: [151293]
    Other proteins in same PDB: d2qrea_, d2qrec_, d2qree1, d2qree2, d2qree3, d2qreg1, d2qreg2, d2qreg3
    automated match to d2ooxb1
    complexed with amz
Human (Homo sapiens) [TaxId:9606] [188044] (5 PDB entries)
1. Domain for 2v92:
  - Domain d2v92b_: 2v92 B: [152792]
    Other proteins in same PDB: d2v92a_, d2v92e1, d2v92e2
    automated match to d2v8qb1
    complexed with amp, atp
2. Domain for 2v9j:
  - Domain d2v9jb_: 2v9j B: [152806]
    Other proteins in same PDB: d2v9ja_, d2v9je1, d2v9je2
    automated match to d2v8qb1
    complexed with amp, atp, mg
3. Domain for 2y8l:
  - Domain d2y8lb_: 2y8l B: [170698]
    Other proteins in same PDB: d2y8la1, d2y8la2, d2y8la3, d2y8le1, d2y8le2
    automated match to d2v8qb1
    complexed with adp, amp
4. Domain for 2y8q:
  - Domain d2y8qb_: 2y8q B: [170700]
    Other proteins in same PDB: d2y8qa1, d2y8qa2, d2y8qa3, d2y8qe1, d2y8qe2
    automated match to d2v8qb1
    complexed with adp, amp
5. Domain for 2ya3:
  - Domain d2ya3b_: 2ya3 B: [170706]
    Other proteins in same PDB: d2ya3a1, d2ya3a2, d2ya3a3, d2ya3e1, d2ya3e2
    automated match to d2v8qb1
    complexed with amp, j7v

More info for Protein automated matches from d.353.1.1: AMPKBI-like

Timeline for Protein automated matches from d.353.1.1: AMPKBI-like:

Protein automated matches from d.353.1.1: AMPKBI-like first appeared in SCOPe 2.01
Protein automated matches from d.353.1.1: AMPKBI-like appears in SCOPe 2.06
Protein automated matches from d.353.1.1: AMPKBI-like appears in the current release, SCOPe 2.08