PDB entry 2qrd
View 2qrd on RCSB PDB site
Description: Crystal Structure of the Adenylate Sensor from AMP-activated Protein Kinase in complex with ADP and ATP
Class: transferase
Keywords: AMPK, ADP, ATP-binding, Kinase, Nucleotide-binding, Serine/threonine-protein kinase, Transferase, CBS domain
Deposited on
2007-07-28, released
2007-10-23
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: 0.192
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: SNF1-like protein kinase ssp2
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: ssp2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qrda_ - Chain 'B':
Compound: SPCC1919.03c protein
Species: Schizosaccharomyces pombe [TaxId:4896]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qrdb_ - Chain 'C':
Compound: SNF1-like protein kinase ssp2
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: ssp2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qrdc_ - Chain 'D':
Compound: SPCC1919.03c protein
Species: Schizosaccharomyces pombe [TaxId:4896]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qrdd_ - Chain 'E':
Compound: Protein C1556.08c
Species: Schizosaccharomyces pombe [TaxId:4896]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qrde1, d2qrde2, d2qrde3 - Chain 'G':
Compound: Protein C1556.08c
Species: Schizosaccharomyces pombe [TaxId:4896]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qrdg1, d2qrdg2, d2qrdg3 - Heterogens: ADP, ATP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2qrdA (A:)
sqstrkksrrnkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiks
rweiphckregkntyayielqlyevmpgcfmldvksngykdiyshpertadhgmddlkss
fpfldlcamlvcklfsa
Sequence, based on observed residues (ATOM records): (download)
>2qrdA (A:)
nkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiksrweiphckre
gkntyayielqlyevmpgcfmldvksngykdiyskssfpfldlcamlvcklfsa
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2qrdB (B:)
mseseqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvl
lnhlaaantqlgvlalsattryhrkyvttamfknfdv
Sequence, based on observed residues (ATOM records): (download)
>2qrdB (B:)
seqysteipafltsnqelklpkppslpphlekcilnsntaykedqsvlpnpnhvllnhla
aantqlgvlalsattryhrkyvttamfknfd
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2qrdC (C:)
sqstrkksrrnkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiks
rweiphckregkntyayielqlyevmpgcfmldvksngykdiyshpertadhgmddlkss
fpfldlcamlvcklfsa
Sequence, based on observed residues (ATOM records): (download)
>2qrdC (C:)
nkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiksrweiphckre
gkntyayielqlyevmpgcfmldvksngykdiylkssfpfldlcamlvcklfsa
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2qrdD (D:)
mseseqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvl
lnhlaaantqlgvlalsattryhrkyvttamfknfdv
Sequence, based on observed residues (ATOM records): (download)
>2qrdD (D:)
eqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvllnhl
aaantqlgvlalsattryhrkyvttamfknfd
- Chain 'E':
Sequence, based on SEQRES records: (download)
>2qrdE (E:)
amdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsapl
wdseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippeti
yvhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketaml
rvplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhl
iqdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkl
egilsladilnyiiydktttpgvpeqtdnfesav
Sequence, based on observed residues (ATOM records): (download)
>2qrdE (E:)
mdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsaplw
dseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippetiy
vhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketamlr
vplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhli
qdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkle
gilsladilnyiiydktdnfesav
- Chain 'G':
Sequence, based on SEQRES records: (download)
>2qrdG (G:)
amdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsapl
wdseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippeti
yvhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketaml
rvplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhl
iqdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkl
egilsladilnyiiydktttpgvpeqtdnfesav
Sequence, based on observed residues (ATOM records): (download)
>2qrdG (G:)
amdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsapl
wdseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippeti
yvhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketaml
rvplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhl
iqdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkl
egilsladilnyiiydktdnfesav