SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.3: cAMP-binding domain-like [51206] (4 families)
Family b.82.3.2: cAMP-binding domain [51210] (13 proteins)
Pfam PF00027
Protein automated matches [190352] (9 species)
not a true protein

Species:

Escherichia coli K-12 [TaxId:83333] [225712] (8 PDB entries)
1. Domains for 3kcc:
  1. Domain d3kcca1: 3kcc A:8-137 [212285]
    Other proteins in same PDB: d3kcca2, d3kccb2
    automated match to d1g6na2
    complexed with cmp; mutant
  2. Domain d3kccb1: 3kcc B:9-137 [212287]
    Other proteins in same PDB: d3kcca2, d3kccb2
    automated match to d1g6na2
    complexed with cmp; mutant
2. Domains for 4hzf:
  1. Domain d4hzfa1: 4hzf A:9-138 [234739]
    Other proteins in same PDB: d4hzfa2, d4hzfb2
    automated match to d4hzfb1
    complexed with cmp, gol, po4
  2. Domain d4hzfb1: 4hzf B:10-138 [228636]
    Other proteins in same PDB: d4hzfa2, d4hzfb2
    automated match to d1hw5a2
    complexed with cmp, gol, po4
3. Domains for 4i01:
  1. Domain d4i01a1: 4i01 A:6-138 [228648]
    Other proteins in same PDB: d4i01a2, d4i01b2
    automated match to d1hw5a2
    complexed with cmp; mutant
  2. Domain d4i01b1: 4i01 B:9-138 [228650]
    Other proteins in same PDB: d4i01a2, d4i01b2
    automated match to d1hw5a2
    complexed with cmp; mutant
4. Domains for 4i02:
  1. Domain d4i02a1: 4i02 A:3-138 [234744]
    Other proteins in same PDB: d4i02a2, d4i02b2, d4i02c2, d4i02d2, d4i02e2, d4i02f2
    automated match to d4i02e1
    complexed with cmp; mutant
  2. Domain d4i02b1: 4i02 B:1-138 [234747]
    Other proteins in same PDB: d4i02a2, d4i02b2, d4i02c2, d4i02d2, d4i02e2, d4i02f2
    automated match to d4i02e1
    complexed with cmp; mutant
  3. Domain d4i02c1: 4i02 C:9-138 [234746]
    Other proteins in same PDB: d4i02a2, d4i02b2, d4i02c2, d4i02d2, d4i02e2, d4i02f2
    automated match to d4i02e1
    complexed with cmp; mutant
  4. Domain d4i02d1: 4i02 D:1-138 [234750]
    Other proteins in same PDB: d4i02a2, d4i02b2, d4i02c2, d4i02d2, d4i02e2, d4i02f2
    automated match to d4i02e1
    complexed with cmp; mutant
  5. Domain d4i02e1: 4i02 E:9-138 [228638]
    Other proteins in same PDB: d4i02a2, d4i02b2, d4i02c2, d4i02d2, d4i02e2, d4i02f2
    automated match to d1hw5a2
    complexed with cmp; mutant
  6. Domain d4i02f1: 4i02 F:9-138 [234745]
    Other proteins in same PDB: d4i02a2, d4i02b2, d4i02c2, d4i02d2, d4i02e2, d4i02f2
    automated match to d4i02e1
    complexed with cmp; mutant
5. Domains for 4i09:
  1. Domain d4i09a1: 4i09 A:6-138 [234756]
    Other proteins in same PDB: d4i09a2, d4i09b2
    automated match to d4i09b1
    complexed with cmp; mutant
  2. Domain d4i09b1: 4i09 B:9-138 [228642]
    Other proteins in same PDB: d4i09a2, d4i09b2
    automated match to d1hw5a2
    complexed with cmp; mutant
6. Domains for 4i0a:
  1. Domain d4i0aa1: 4i0a A:8-138 [228640]
    Other proteins in same PDB: d4i0aa2, d4i0ab2
    automated match to d1hw5a2
    complexed with cmp, gol; mutant
  2. Domain d4i0ab1: 4i0a B:9-138 [234754]
    Other proteins in same PDB: d4i0aa2, d4i0ab2
    automated match to d4i0aa1
    complexed with cmp, gol; mutant
7. Domains for 4i0b:
  1. Domain d4i0ba1: 4i0b A:9-138 [228644]
    Other proteins in same PDB: d4i0ba2, d4i0bb2
    automated match to d1hw5a2
    complexed with cmp; mutant
  2. Domain d4i0bb1: 4i0b B:9-138 [228646]
    Other proteins in same PDB: d4i0ba2, d4i0bb2
    automated match to d1hw5a2
    complexed with cmp; mutant
8. Domains for 4r8h:
  1. Domain d4r8ha1: 4r8h A:9-138 [275218]
    Other proteins in same PDB: d4r8ha2, d4r8hb2
    automated match to d4i02b1
    complexed with gol, sp1
  2. Domain d4r8hb1: 4r8h B:9-138 [275220]
    Other proteins in same PDB: d4r8ha2, d4r8hb2
    automated match to d4i02b1
    complexed with gol, sp1
Escherichia coli [TaxId:469008] [255647] (4 PDB entries)
1. Domain for 1db7:
  - Domain d1db7a3: 1db7 A:8-137 [302312]
    Other proteins in same PDB: d1db7a4
    automated match to d4i02b1
    protein/DNA complex; complexed with cmp
2. Domain for 1db8:
  - Domain d1db8a3: 1db8 A:8-137 [302314]
    Other proteins in same PDB: d1db8a4
    automated match to d4i02b1
    protein/DNA complex; complexed with cmp
3. Domain for 1db9:
  - Domain d1db9a3: 1db9 A:8-137 [302316]
    Other proteins in same PDB: d1db9a4
    automated match to d4i02b1
    protein/DNA complex; complexed with cmp
4. Domains for 2wc2:
  1. Domain d2wc2a1: 2wc2 A:1-137 [244112]
    Other proteins in same PDB: d2wc2a2, d2wc2b2
    automated match to d4i02b1
  2. Domain d2wc2b1: 2wc2 B:1-137 [244114]
    Other proteins in same PDB: d2wc2a2, d2wc2b2
    automated match to d4i02b1
Human (Homo sapiens) [TaxId:9606] [189505] (8 PDB entries)
1. Domain for 2mng:
  - Domain d2mnga1: 2mng A:579-707 [256448]
    Other proteins in same PDB: d2mnga2
    automated match to d3cl1a_
2. Domain for 2mpf:
  - Domain d2mpfa_: 2mpf A: [259382]
    automated match to d3cl1a_
3. Domain for 3otf:
  - Domain d3otfa_: 3otf A: [183280]
    automated match to d1q5oa_
    complexed with cmp
4. Domain for 3u10:
  - Domain d3u10a_: 3u10 A: [186052]
    automated match to d1q5oa_
    complexed with cmp
5. Domains for 3u11:
  1. Domain d3u11a_: 3u11 A: [186053]
    automated match to d1q5oa_
    complexed with cmp, gol
  2. Domain d3u11b_: 3u11 B: [186054]
    automated match to d1q5oa_
    complexed with cmp, gol
6. Domain for 4hbn:
  - Domain d4hbna1: 4hbn A:521-719 [194138]
    Other proteins in same PDB: d4hbna2
    automated match to d3u11b_
    complexed with cmp, po4; mutant
7. Domains for 4kl1:
  1. Domain d4kl1a_: 4kl1 A: [256868]
    automated match to d4nvpa_
    complexed with act, gol, pcg
  2. Domain d4kl1b_: 4kl1 B: [262829]
    automated match to d4nvpa_
    complexed with act, gol, pcg
  3. Domain d4kl1c_: 4kl1 C: [262830]
    automated match to d4nvpa_
    complexed with act, gol, pcg
  4. Domain d4kl1d_: 4kl1 D: [262831]
    automated match to d4nvpa_
    complexed with act, gol, pcg
8. Domain for 4nvp:
  - Domain d4nvpa1: 4nvp A:521-718 [237854]
    Other proteins in same PDB: d4nvpa2
    automated match to d3u11b_
    complexed with 7ch
Mesorhizobium loti [TaxId:266835] [257109] (1 PDB entry)
- Domains for 4muv:
  1. Domain d4muva1: 4muv A:216-355 [257110]
    Other proteins in same PDB: d4muva2
    automated match to d2k0ga_
    complexed with na, pcg; mutant
  2. Domain d4muvb_: 4muv B: [257965]
    Other proteins in same PDB: d4muva2
    automated match to d2k0ga_
    complexed with na, pcg; mutant
Mesorhizobium loti [TaxId:381] [188511] (2 PDB entries)
1. Domain for 2kxl:
  - Domain d2kxla1: 2kxl A:216-355 [242690]
    Other proteins in same PDB: d2kxla2
    automated match to d1vp6a_
2. Domains for 3co2:
  1. Domain d3co2a_: 3co2 A: [173363]
    automated match to d1vp6a_
    mutant
  2. Domain d3co2b_: 3co2 B: [173364]
    automated match to d1vp6a_
    mutant
  3. Domain d3co2c_: 3co2 C: [173365]
    automated match to d1vp6a_
    mutant
  4. Domain d3co2d_: 3co2 D: [173366]
    automated match to d1vp6a_
    mutant
Mouse (Mus musculus) [TaxId:10090] [187178] (3 PDB entries)
1. Domains for 3etq:
  1. Domain d3etqa_: 3etq A: [175217]
    automated match to d1q5oa_
    complexed with cmp; mutant
  2. Domain d3etqb_: 3etq B: [175218]
    automated match to d1q5oa_
    complexed with cmp; mutant
2. Domains for 3ffq:
  1. Domain d3ffqa_: 3ffq A: [175758]
    automated match to d1q5oa_
    complexed with br
  2. Domain d3ffqb_: 3ffq B: [175759]
    automated match to d1q5oa_
    complexed with br
3. Domains for 3u0z:
  1. Domain d3u0za_: 3u0z A: [186050]
    automated match to d1q5oa_
    complexed with cmp
  2. Domain d3u0zb_: 3u0z B: [186051]
    automated match to d1q5oa_
    complexed with cmp
Purple sea urchin (Strongylocentrotus purpuratus) [TaxId:7668] [188850] (1 PDB entry)
- Domain for 2ptm:
  - Domain d2ptma_: 2ptm A: [167269]
    automated match to d1q5oa_
    complexed with cmp, nco
Rhizobium loti [TaxId:381] [187243] (3 PDB entries)
1. Domain for 2k0g:
  - Domain d2k0ga1: 2k0g A:216-355 [242339]
    Other proteins in same PDB: d2k0ga2
    automated match to d1vp6a_
    complexed with cmp
2. Domains for 3cl1:
  1. Domain d3cl1a_: 3cl1 A: [156750]
    automated match to d1vp6a_
    complexed with cl, k, pcg, pol
  2. Domain d3cl1b_: 3cl1 B: [156751]
    automated match to d1vp6a_
    complexed with cl, k, pcg, pol
3. Domains for 3clp:
  1. Domain d3clpa_: 3clp A: [173315]
    automated match to d1vp6a_
    complexed with cmp; mutant
  2. Domain d3clpc_: 3clp C: [173316]
    automated match to d1vp6a_
    complexed with cmp; mutant
Yersinia pestis [TaxId:214092] [353902] (1 PDB entry)
- Domains for 6dt4:
  1. Domain d6dt4a1: 6dt4 A:6-138 [353910]
    Other proteins in same PDB: d6dt4a2, d6dt4b2
    automated match to d4i02b1
    protein/DNA complex; complexed with cl, cmp
  2. Domain d6dt4b1: 6dt4 B:9-138 [353903]
    Other proteins in same PDB: d6dt4a2, d6dt4b2
    automated match to d4i02b1
    protein/DNA complex; complexed with cl, cmp

More info for Protein automated matches from b.82.3.2: cAMP-binding domain

Timeline for Protein automated matches from b.82.3.2: cAMP-binding domain:

Protein automated matches from b.82.3.2: cAMP-binding domain first appeared in SCOPe 2.01
Protein automated matches from b.82.3.2: cAMP-binding domain appears in SCOPe 2.06
Protein automated matches from b.82.3.2: cAMP-binding domain appears in the current release, SCOPe 2.08