Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1390576Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 1390577Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 1391676Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 1391677Protein automated matches [190039] (57 species)
    not a true protein
  7. 1391854Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (69 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

  1. Domain(s) for 1s7y:
    1. 1391918Domain d1s7ya_: 1s7y A: [161347]
      automated match to d1lb8a_
      complexed with glu
    2. 1391919Domain d1s7yb_: 1s7y B: [161348]
      automated match to d1lb8a_
      complexed with glu
  2. Domain(s) for 1s9t:
    1. 1391939Domain d1s9ta_: 1s9t A: [161350]
      automated match to d1lb8a_
      complexed with cl, qus
    2. 1391940Domain d1s9tb_: 1s9t B: [161351]
      automated match to d1lb8a_
      complexed with cl, qus
  3. Domain(s) for 1sd3:
    1. 1391930Domain d1sd3a_: 1sd3 A: [161352]
      automated match to d1lb8a_
      complexed with sym
    2. 1391931Domain d1sd3b_: 1sd3 B: [161353]
      automated match to d1lb8a_
      complexed with sym
  4. Domain(s) for 1tt1:
    1. 1391937Domain d1tt1a_: 1tt1 A: [161355]
      automated match to d1lb8a_
      complexed with kai
    2. 1391938Domain d1tt1b_: 1tt1 B: [161356]
      automated match to d1lb8a_
      complexed with kai
  5. Domain(s) for 1vso:
  6. Domain(s) for 1ycj:
  7. Domain(s) for 2a5t:
  8. Domain(s) for 2f34:
    1. 1391901Domain d2f34a_: 2f34 A: [161417]
      automated match to d1lb8a_
      complexed with 1pe, cl, uba
    2. 1391902Domain d2f34b_: 2f34 B: [161418]
      automated match to d1lb8a_
      complexed with 1pe, cl, uba
  9. Domain(s) for 2f35:
    1. 1391920Domain d2f35a_: 2f35 A: [161419]
      automated match to d1lb8a_
      complexed with 1pe, cl, ubc
    2. 1391921Domain d2f35b_: 2f35 B: [161420]
      automated match to d1lb8a_
      complexed with 1pe, cl, ubc
  10. Domain(s) for 2f36:
    1. 1391958Domain d2f36a_: 2f36 A: [161421]
      automated match to d1lb8a_
      complexed with glu, so4
    2. 1391959Domain d2f36b_: 2f36 B: [161422]
      automated match to d1lb8a_
      complexed with glu, so4
    3. 1391960Domain d2f36c_: 2f36 C: [161423]
      automated match to d1lb8a_
      complexed with glu, so4
    4. 1391961Domain d2f36d_: 2f36 D: [161424]
      automated match to d1lb8a_
      complexed with glu, so4
  11. Domain(s) for 2i0b:
    1. 1391925Domain d2i0ba_: 2i0b A: [204674]
      automated match to d2znta_
      complexed with glu, so4; mutant
    2. 1391926Domain d2i0bb_: 2i0b B: [204675]
      automated match to d2znta_
      complexed with glu, so4; mutant
    3. 1391927Domain d2i0bc_: 2i0b C: [204676]
      automated match to d2znta_
      complexed with glu, so4; mutant
  12. Domain(s) for 2i0c:
    1. 1391967Domain d2i0ca_: 2i0c A: [204677]
      automated match to d2znta_
      complexed with glu
    2. 1391968Domain d2i0cb_: 2i0c B: [204678]
      automated match to d2znta_
      complexed with glu
  13. Domain(s) for 2ojt:
    1. 1391941Domain d2ojta_: 2ojt A: [161490]
      automated match to d1lb8a_
      complexed with 1pe, br, uba
    2. 1391942Domain d2ojtb_: 2ojt B: [161491]
      automated match to d1lb8a_
      complexed with 1pe, br, uba
  14. Domain(s) for 2pbw:
  15. Domain(s) for 2qs1:
    1. 1391915Domain d2qs1a_: 2qs1 A: [205877]
      automated match to d2f34a_
      protein/RNA complex; complexed with 1pe, cl, ub1
    2. 1391916Domain d2qs1b_: 2qs1 B: [205878]
      automated match to d2f34a_
      protein/RNA complex; complexed with 1pe, cl, ub1
  16. Domain(s) for 2qs2:
    1. 1391909Domain d2qs2a_: 2qs2 A: [205879]
      automated match to d2f34a_
      protein/RNA complex; complexed with 1pe, cl, ubf
    2. 1391910Domain d2qs2b_: 2qs2 B: [205880]
      automated match to d2f34a_
      protein/RNA complex; complexed with 1pe, cl, ubf
  17. Domain(s) for 2qs3:
    1. 1391905Domain d2qs3a_: 2qs3 A: [205881]
      automated match to d2f34a_
      protein/RNA complex; complexed with 1pe, cl, ube
    2. 1391906Domain d2qs3b_: 2qs3 B: [205882]
      automated match to d2f34a_
      protein/RNA complex; complexed with 1pe, cl, ube
  18. Domain(s) for 2qs4:
    1. 1391878Domain d2qs4a_: 2qs4 A: [198313]
      automated match to d2f36a_
      protein/RNA complex; complexed with gol, ly5, nh4
    2. 1391879Domain d2qs4b_: 2qs4 B: [195736]
      automated match to d1ycjb_
      protein/RNA complex; complexed with gol, ly5, nh4
    3. 1391880Domain d2qs4c_: 2qs4 C: [198314]
      automated match to d2f34a_
      protein/RNA complex; complexed with gol, ly5, nh4
    4. 1391881Domain d2qs4d_: 2qs4 D: [195735]
      automated match to d1ycjb_
      protein/RNA complex; complexed with gol, ly5, nh4
  19. Domain(s) for 2rc9:
  20. Domain(s) for 2v3t:
    1. 1391991Domain d2v3ta_: 2v3t A: [198380]
      automated match to d2v3tb_
      complexed with ca
    2. 1391992Domain d2v3tb_: 2v3t B: [194592]
      automated match to d1ycjb_
      complexed with ca
  21. Domain(s) for 2v3u:
  22. Domain(s) for 2wky:
    1. 1391973Domain d2wkya_: 2wky A: [198516]
      automated match to d2wkyb_
      protein/RNA complex; complexed with cl, ibc
    2. 1391974Domain d2wkyb_: 2wky B: [196538]
      automated match to d1ycjb_
      protein/RNA complex; complexed with cl, ibc
  23. Domain(s) for 2xxr:
    1. 1391882Domain d2xxra_: 2xxr A: [207416]
      automated match to d2znta_
      complexed with cl, glu, na
    2. 1391883Domain d2xxrb_: 2xxr B: [207417]
      automated match to d2znta_
      complexed with cl, glu, na
  24. Domain(s) for 2xxt:
    1. 1391913Domain d2xxta_: 2xxt A: [207418]
      automated match to d2znta_
      complexed with cl, kai, na
    2. 1391914Domain d2xxtb_: 2xxt B: [207419]
      automated match to d2znta_
      complexed with cl, kai, na
  25. Domain(s) for 2xxu:
    1. 1391873Domain d2xxua_: 2xxu A: [207420]
      automated match to d2znta_
      complexed with cl, glu, na
    2. 1391874Domain d2xxub_: 2xxu B: [207421]
      automated match to d2znta_
      complexed with cl, glu, na
  26. Domain(s) for 2xxv:
    1. 1391890Domain d2xxva_: 2xxv A: [207422]
      automated match to d2znta_
      complexed with cl, kai
    2. 1391891Domain d2xxvb_: 2xxv B: [207423]
      automated match to d2znta_
      complexed with cl, kai
  27. Domain(s) for 2xxw:
    1. 1391970Domain d2xxwa_: 2xxw A: [207424]
      automated match to d2znta_
      complexed with cl, glu
    2. 1391971Domain d2xxwb_: 2xxw B: [207425]
      automated match to d2znta_
      complexed with cl, glu
  28. Domain(s) for 2xxx:
    1. 1391953Domain d2xxxa_: 2xxx A: [207426]
      automated match to d2znta_
      complexed with glu
    2. 1391954Domain d2xxxb_: 2xxx B: [207427]
      automated match to d2znta_
      complexed with glu
    3. 1391955Domain d2xxxc_: 2xxx C: [207428]
      automated match to d2znta_
      complexed with glu
    4. 1391956Domain d2xxxd_: 2xxx D: [207429]
      automated match to d2znta_
      complexed with glu
  29. Domain(s) for 3c31:
    1. 1391870Domain d3c31a_: 3c31 A: [199153]
      automated match to d3c32b_
      complexed with cl, gol, kai, li, so4
    2. 1391871Domain d3c31b_: 3c31 B: [195475]
      automated match to d1ycjb_
      complexed with cl, gol, kai, li, so4
  30. Domain(s) for 3c32:
    1. 1391897Domain d3c32a_: 3c32 A: [199154]
      automated match to d3c32b_
      complexed with cl, gol, kai, na
    2. 1391898Domain d3c32b_: 3c32 B: [195479]
      automated match to d1ycjb_
      complexed with cl, gol, kai, na
  31. Domain(s) for 3c33:
    1. 1391892Domain d3c33a_: 3c33 A: [199155]
      automated match to d3c32b_
      complexed with cl, gol, k, kai
    2. 1391893Domain d3c33b_: 3c33 B: [195477]
      automated match to d1ycjb_
      complexed with cl, gol, k, kai
  32. Domain(s) for 3c34:
    1. 1391903Domain d3c34a_: 3c34 A: [199156]
      automated match to d3c32b_
      complexed with cl, gol, kai, rb
    2. 1391904Domain d3c34b_: 3c34 B: [195476]
      automated match to d1ycjb_
      complexed with cl, gol, kai, rb
  33. Domain(s) for 3c35:
    1. 1391933Domain d3c35a_: 3c35 A: [199157]
      automated match to d3c32b_
      complexed with cl, cs, gol, kai
    2. 1391934Domain d3c35b_: 3c35 B: [195474]
      automated match to d1ycjb_
      complexed with cl, cs, gol, kai
  34. Domain(s) for 3c36:
    1. 1391888Domain d3c36a_: 3c36 A: [199158]
      automated match to d3c32b_
      complexed with cl, gol, kai, nh4
    2. 1391889Domain d3c36b_: 3c36 B: [195478]
      automated match to d1ycjb_
      complexed with cl, gol, kai, nh4
  35. Domain(s) for 3g3f:
  36. Domain(s) for 3g3g:
    1. 1391855Domain d3g3ga_: 3g3g A: [210336]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
    2. 1391856Domain d3g3gb_: 3g3g B: [210337]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
  37. Domain(s) for 3g3h:
    1. 1391868Domain d3g3ha_: 3g3h A: [210338]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
    2. 1391869Domain d3g3hb_: 3g3h B: [210339]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
  38. Domain(s) for 3g3i:
    1. 1391863Domain d3g3ia_: 3g3i A: [210340]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
    2. 1391864Domain d3g3ib_: 3g3i B: [210341]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
  39. Domain(s) for 3g3j:
    1. 1391857Domain d3g3ja_: 3g3j A: [210342]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
    2. 1391858Domain d3g3jb_: 3g3j B: [210343]
      automated match to d2znta_
      complexed with cl, glu, na; mutant
  40. Domain(s) for 3g3k:
    1. 1391865Domain d3g3ka_: 3g3k A: [210344]
      automated match to d2znta_
      complexed with cl, glu, ipa, na; mutant
    2. 1391866Domain d3g3kb_: 3g3k B: [210345]
      automated match to d2znta_
      complexed with cl, glu, ipa, na; mutant
  41. Domain(s) for 3gba:
    1. 1391859Domain d3gbaa_: 3gba A: [210469]
      automated match to d1ycjb_
      complexed with cl, dyh, gol, so4
    2. 1391860Domain d3gbab_: 3gba B: [210470]
      automated match to d1ycjb_
      complexed with cl, dyh, gol, so4
    3. 1391861Domain d3gbac_: 3gba C: [210471]
      automated match to d1ycjb_
      complexed with cl, dyh, gol, so4
    4. 1391862Domain d3gbad_: 3gba D: [210472]
      automated match to d1ycjb_
      complexed with cl, dyh, gol, so4
  42. Domain(s) for 3gbb:
    1. 1391962Domain d3gbba_: 3gbb A: [210473]
      automated match to d1ycjb_
      complexed with ms8
    2. 1391963Domain d3gbbb_: 3gbb B: [210474]
      automated match to d1ycjb_
      complexed with ms8
  43. Domain(s) for 3oek:
  44. Domain(s) for 3oel:
  45. Domain(s) for 3oem:
  46. Domain(s) for 3oen:
  47. Domain(s) for 3s2v:
    1. 1391984Domain d3s2va_: 3s2v A: [216182]
      automated match to d1ycjb_
      complexed with 3hu, cl, gol, so4
    2. 1391985Domain d3s2vb_: 3s2v B: [216183]
      automated match to d1ycjb_
      complexed with 3hu, cl, gol, so4
  48. Domain(s) for 3s9e:
    1. 1391875Domain d3s9ea_: 3s9e A: [216257]
      automated match to d4igra_
      complexed with cl, glu, gol, na, po4
    2. 1391876Domain d3s9eb_: 3s9e B: [216258]
      automated match to d4igra_
      complexed with cl, glu, gol, na, po4
  49. Domain(s) for 3u92:
    1. 1391923Domain d3u92a_: 3u92 A: [217230]
      automated match to d3u93b_
      complexed with cl, kai, zn
    2. 1391924Domain d3u92b_: 3u92 B: [217231]
      automated match to d3u93b_
      complexed with cl, kai, zn
  50. Domain(s) for 3u93:
    1. 1391947Domain d3u93a_: 3u93 A: [200944]
      automated match to d3u93b_
      complexed with cl, glu, zn
    2. 1391948Domain d3u93b_: 3u93 B: [193486]
      automated match to d1ycjb_
      complexed with cl, glu, zn
  51. Domain(s) for 3u94:
    1. 1391943Domain d3u94a_: 3u94 A: [217232]
      automated match to d3u93b_
      complexed with cl, glu, so4, zn
    2. 1391944Domain d3u94b_: 3u94 B: [217233]
      automated match to d3u93b_
      complexed with cl, glu, so4, zn
    3. 1391945Domain d3u94c_: 3u94 C: [217234]
      automated match to d3u93b_
      complexed with cl, glu, so4, zn
    4. 1391946Domain d3u94d_: 3u94 D: [217235]
      automated match to d3u93b_
      complexed with cl, glu, so4, zn
  52. Domain(s) for 4bdl:
    1. 1391899Domain d4bdla_: 4bdl A: [219447]
      automated match to d2znta_
      complexed with glu, na
    2. 1391900Domain d4bdlb_: 4bdl B: [219448]
      automated match to d2znta_
      complexed with glu, na
  53. Domain(s) for 4bdn:
    1. 1391976Domain d4bdna_: 4bdn A: [219449]
      automated match to d2znta_
      complexed with glu, na
    2. 1391977Domain d4bdnb_: 4bdn B: [219450]
      automated match to d2znta_
      complexed with glu, na
    3. 1391978Domain d4bdnc_: 4bdn C: [219451]
      automated match to d2znta_
      complexed with glu, na
    4. 1391979Domain d4bdnd_: 4bdn D: [219452]
      automated match to d2znta_
      complexed with glu, na
  54. Domain(s) for 4bdo:
    1. 1391980Domain d4bdoa_: 4bdo A: [219453]
      automated match to d2znta_
      complexed with glu, kai, na
    2. 1391981Domain d4bdob_: 4bdo B: [219454]
      automated match to d2znta_
      complexed with glu, kai, na
    3. 1391982Domain d4bdoc_: 4bdo C: [219455]
      automated match to d2znta_
      complexed with glu, kai, na
    4. 1391983Domain d4bdod_: 4bdo D: [219456]
      automated match to d2znta_
      complexed with glu, kai, na
  55. Domain(s) for 4bdq:
    1. 1391911Domain d4bdqa_: 4bdq A: [219457]
      automated match to d2znta_
      complexed with glu, na
    2. 1391912Domain d4bdqb_: 4bdq B: [219458]
      automated match to d2znta_
      complexed with glu, na
  56. Domain(s) for 4bdr:
    1. 1391884Domain d4bdra_: 4bdr A: [219459]
      automated match to d2znta_
      complexed with cl, kai, na
    2. 1391885Domain d4bdrb_: 4bdr B: [219460]
      automated match to d2znta_
      complexed with cl, kai, na
  57. Domain(s) for 4dld:
    1. 1391949Domain d4dlda_: 4dld A: [219843]
      automated match to d1ycjb_
      complexed with cl, gol, so4, tzg
    2. 1391950Domain d4dldb_: 4dld B: [219844]
      automated match to d1ycjb_
      complexed with cl, gol, so4, tzg
  58. Domain(s) for 4e0w:
  59. Domain(s) for 4e0x:
    1. 1391935Domain d4e0xa_: 4e0x A: [220137]
      automated match to d1ycjb_
      complexed with cl, kai, so4
    2. 1391936Domain d4e0xb_: 4e0x B: [220138]
      automated match to d1ycjb_
      complexed with cl, kai, so4
  60. Domain(s) for 4g8n:
  61. Domain(s) for 4igr:
  62. Domain(s) for 4jwx:
  63. Domain(s) for 4jwy:
  64. Domain(s) for 4kcd:
    1. 1391886Domain d4kcda_: 4kcd A: [227583]
      automated match to d2rc9b_
      complexed with gol
    2. 1391887Domain d4kcdb_: 4kcd B: [227584]
      automated match to d2rc9b_
      complexed with gol
  65. Domain(s) for 4lz5:
    1. 1391894Domain d4lz5a_: 4lz5 A: [229654]
      automated match to d4lz5b_
      complexed with 1yv, glu, zn
    2. 1391895Domain d4lz5b_: 4lz5 B: [229429]
      automated match to d3s9eb_
      complexed with 1yv, glu, zn
    3. 1391896Domain d4lz5c_: 4lz5 C: [229655]
      automated match to d4lz5b_
      complexed with 1yv, glu, zn
  66. Domain(s) for 4lz7:
    1. 1391986Domain d4lz7a_: 4lz7 A: [229652]
      automated match to d4lz5b_
      complexed with 1yw, glu, zn
    2. 1391987Domain d4lz7b_: 4lz7 B: [229653]
      automated match to d4lz5b_
      complexed with 1yw, glu, zn
    3. 1391988Domain d4lz7c_: 4lz7 C: [229648]
      automated match to d4lz5b_
      complexed with 1yw, glu, zn
  67. Domain(s) for 4lz8:
    1. 1391964Domain d4lz8a_: 4lz8 A: [229651]
      automated match to d4lz5b_
      complexed with 1yx, glu, zn
    2. 1391965Domain d4lz8b_: 4lz8 B: [229649]
      automated match to d4lz5b_
      complexed with 1yx, glu, zn
    3. 1391966Domain d4lz8c_: 4lz8 C: [229650]
      automated match to d4lz5b_
      complexed with 1yx, glu, zn
  68. Domain(s) for 4mh5:
  69. Domain(s) for 4nf4:

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from c.94.1.0 automated matches

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from c.94.1.0 automated matches: