Class c: Alpha and beta proteins (a/b) [51349] (147 folds) |
Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily) consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest |
Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) Similar in architecture to the superfamily I but partly differs in topology |
Family c.94.1.0: automated matches [191309] (1 protein) not a true family |
Protein automated matches [190039] (57 species) not a true protein |
Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (69 PDB entries) |
Domain d1s7ya_: 1s7y A: [161347] automated match to d1lb8a_ complexed with glu |
Domain d1s7yb_: 1s7y B: [161348] automated match to d1lb8a_ complexed with glu |
Domain d1s9ta_: 1s9t A: [161350] automated match to d1lb8a_ complexed with cl, qus |
Domain d1s9tb_: 1s9t B: [161351] automated match to d1lb8a_ complexed with cl, qus |
Domain d1sd3a_: 1sd3 A: [161352] automated match to d1lb8a_ complexed with sym |
Domain d1sd3b_: 1sd3 B: [161353] automated match to d1lb8a_ complexed with sym |
Domain d1tt1a_: 1tt1 A: [161355] automated match to d1lb8a_ complexed with kai |
Domain d1tt1b_: 1tt1 B: [161356] automated match to d1lb8a_ complexed with kai |
Domain d1vsoa_: 1vso A: [193368] automated match to d1ycjb_ complexed with at1, gol |
Domain d1ycjb_: 1ycj B: [161365] Other proteins in same PDB: d1ycja1 automated match to d1lb8a_ complexed with glu, so4 |
Domain d2a5tb_: 2a5t B: [161379] Other proteins in same PDB: d2a5ta_ automated match to d1pb7a_ complexed with glu, gly |
Domain d2f34a_: 2f34 A: [161417] automated match to d1lb8a_ complexed with 1pe, cl, uba |
Domain d2f34b_: 2f34 B: [161418] automated match to d1lb8a_ complexed with 1pe, cl, uba |
Domain d2f35a_: 2f35 A: [161419] automated match to d1lb8a_ complexed with 1pe, cl, ubc |
Domain d2f35b_: 2f35 B: [161420] automated match to d1lb8a_ complexed with 1pe, cl, ubc |
Domain d2f36a_: 2f36 A: [161421] automated match to d1lb8a_ complexed with glu, so4 |
Domain d2f36b_: 2f36 B: [161422] automated match to d1lb8a_ complexed with glu, so4 |
Domain d2f36c_: 2f36 C: [161423] automated match to d1lb8a_ complexed with glu, so4 |
Domain d2f36d_: 2f36 D: [161424] automated match to d1lb8a_ complexed with glu, so4 |
Domain d2i0ba_: 2i0b A: [204674] automated match to d2znta_ complexed with glu, so4; mutant |
Domain d2i0bb_: 2i0b B: [204675] automated match to d2znta_ complexed with glu, so4; mutant |
Domain d2i0bc_: 2i0b C: [204676] automated match to d2znta_ complexed with glu, so4; mutant |
Domain d2i0ca_: 2i0c A: [204677] automated match to d2znta_ complexed with glu |
Domain d2i0cb_: 2i0c B: [204678] automated match to d2znta_ complexed with glu |
Domain d2ojta_: 2ojt A: [161490] automated match to d1lb8a_ complexed with 1pe, br, uba |
Domain d2ojtb_: 2ojt B: [161491] automated match to d1lb8a_ complexed with 1pe, br, uba |
Domain d2pbwb_: 2pbw B: [205490] Other proteins in same PDB: d2pbwa1 automated match to d1ycjb_ complexed with doq |
Domain d2qs1a_: 2qs1 A: [205877] automated match to d2f34a_ protein/RNA complex; complexed with 1pe, cl, ub1 |
Domain d2qs1b_: 2qs1 B: [205878] automated match to d2f34a_ protein/RNA complex; complexed with 1pe, cl, ub1 |
Domain d2qs2a_: 2qs2 A: [205879] automated match to d2f34a_ protein/RNA complex; complexed with 1pe, cl, ubf |
Domain d2qs2b_: 2qs2 B: [205880] automated match to d2f34a_ protein/RNA complex; complexed with 1pe, cl, ubf |
Domain d2qs3a_: 2qs3 A: [205881] automated match to d2f34a_ protein/RNA complex; complexed with 1pe, cl, ube |
Domain d2qs3b_: 2qs3 B: [205882] automated match to d2f34a_ protein/RNA complex; complexed with 1pe, cl, ube |
Domain d2qs4a_: 2qs4 A: [198313] automated match to d2f36a_ protein/RNA complex; complexed with gol, ly5, nh4 |
Domain d2qs4b_: 2qs4 B: [195736] automated match to d1ycjb_ protein/RNA complex; complexed with gol, ly5, nh4 |
Domain d2qs4c_: 2qs4 C: [198314] automated match to d2f34a_ protein/RNA complex; complexed with gol, ly5, nh4 |
Domain d2qs4d_: 2qs4 D: [195735] automated match to d1ycjb_ protein/RNA complex; complexed with gol, ly5, nh4 |
Domain d2rc9b_: 2rc9 B: [195742] automated match to d2a5tb_ complexed with 1ac |
Domain d2v3ta_: 2v3t A: [198380] automated match to d2v3tb_ complexed with ca |
Domain d2v3tb_: 2v3t B: [194592] automated match to d1ycjb_ complexed with ca |
Domain d2v3ua_: 2v3u A: [206201] automated match to d2v3tb_ complexed with cl, dsn, na, scn |
Domain d2wkya_: 2wky A: [198516] automated match to d2wkyb_ protein/RNA complex; complexed with cl, ibc |
Domain d2wkyb_: 2wky B: [196538] automated match to d1ycjb_ protein/RNA complex; complexed with cl, ibc |
Domain d2xxra_: 2xxr A: [207416] automated match to d2znta_ complexed with cl, glu, na |
Domain d2xxrb_: 2xxr B: [207417] automated match to d2znta_ complexed with cl, glu, na |
Domain d2xxta_: 2xxt A: [207418] automated match to d2znta_ complexed with cl, kai, na |
Domain d2xxtb_: 2xxt B: [207419] automated match to d2znta_ complexed with cl, kai, na |
Domain d2xxua_: 2xxu A: [207420] automated match to d2znta_ complexed with cl, glu, na |
Domain d2xxub_: 2xxu B: [207421] automated match to d2znta_ complexed with cl, glu, na |
Domain d2xxva_: 2xxv A: [207422] automated match to d2znta_ complexed with cl, kai |
Domain d2xxvb_: 2xxv B: [207423] automated match to d2znta_ complexed with cl, kai |
Domain d2xxwa_: 2xxw A: [207424] automated match to d2znta_ complexed with cl, glu |
Domain d2xxwb_: 2xxw B: [207425] automated match to d2znta_ complexed with cl, glu |
Domain d2xxxa_: 2xxx A: [207426] automated match to d2znta_ complexed with glu |
Domain d2xxxb_: 2xxx B: [207427] automated match to d2znta_ complexed with glu |
Domain d2xxxc_: 2xxx C: [207428] automated match to d2znta_ complexed with glu |
Domain d2xxxd_: 2xxx D: [207429] automated match to d2znta_ complexed with glu |
Domain d3c31a_: 3c31 A: [199153] automated match to d3c32b_ complexed with cl, gol, kai, li, so4 |
Domain d3c31b_: 3c31 B: [195475] automated match to d1ycjb_ complexed with cl, gol, kai, li, so4 |
Domain d3c32a_: 3c32 A: [199154] automated match to d3c32b_ complexed with cl, gol, kai, na |
Domain d3c32b_: 3c32 B: [195479] automated match to d1ycjb_ complexed with cl, gol, kai, na |
Domain d3c33a_: 3c33 A: [199155] automated match to d3c32b_ complexed with cl, gol, k, kai |
Domain d3c33b_: 3c33 B: [195477] automated match to d1ycjb_ complexed with cl, gol, k, kai |
Domain d3c34a_: 3c34 A: [199156] automated match to d3c32b_ complexed with cl, gol, kai, rb |
Domain d3c34b_: 3c34 B: [195476] automated match to d1ycjb_ complexed with cl, gol, kai, rb |
Domain d3c35a_: 3c35 A: [199157] automated match to d3c32b_ complexed with cl, cs, gol, kai |
Domain d3c35b_: 3c35 B: [195474] automated match to d1ycjb_ complexed with cl, cs, gol, kai |
Domain d3c36a_: 3c36 A: [199158] automated match to d3c32b_ complexed with cl, gol, kai, nh4 |
Domain d3c36b_: 3c36 B: [195478] automated match to d1ycjb_ complexed with cl, gol, kai, nh4 |
Domain d3g3fa_: 3g3f A: [210334] Other proteins in same PDB: d3g3fb1 automated match to d1s7ya_ complexed with cl, glu, ipa, na |
Domain d3g3ga_: 3g3g A: [210336] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3gb_: 3g3g B: [210337] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3ha_: 3g3h A: [210338] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3hb_: 3g3h B: [210339] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3ia_: 3g3i A: [210340] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3ib_: 3g3i B: [210341] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3ja_: 3g3j A: [210342] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3jb_: 3g3j B: [210343] automated match to d2znta_ complexed with cl, glu, na; mutant |
Domain d3g3ka_: 3g3k A: [210344] automated match to d2znta_ complexed with cl, glu, ipa, na; mutant |
Domain d3g3kb_: 3g3k B: [210345] automated match to d2znta_ complexed with cl, glu, ipa, na; mutant |
Domain d3gbaa_: 3gba A: [210469] automated match to d1ycjb_ complexed with cl, dyh, gol, so4 |
Domain d3gbab_: 3gba B: [210470] automated match to d1ycjb_ complexed with cl, dyh, gol, so4 |
Domain d3gbac_: 3gba C: [210471] automated match to d1ycjb_ complexed with cl, dyh, gol, so4 |
Domain d3gbad_: 3gba D: [210472] automated match to d1ycjb_ complexed with cl, dyh, gol, so4 |
Domain d3gbba_: 3gbb A: [210473] automated match to d1ycjb_ complexed with ms8 |
Domain d3gbbb_: 3gbb B: [210474] automated match to d1ycjb_ complexed with ms8 |
Domain d3oeka_: 3oek A: [214321] automated match to d3oena_ complexed with asp |
Domain d3oela_: 3oel A: [214322] automated match to d3oena_ complexed with dgl |
Domain d3oema_: 3oem A: [214323] automated match to d3oena_ complexed with oem |
Domain d3oena_: 3oen A: [196351] automated match to d2a5tb_ complexed with glu |
Domain d3s2va_: 3s2v A: [216182] automated match to d1ycjb_ complexed with 3hu, cl, gol, so4 |
Domain d3s2vb_: 3s2v B: [216183] automated match to d1ycjb_ complexed with 3hu, cl, gol, so4 |
Domain d3s9ea_: 3s9e A: [216257] automated match to d4igra_ complexed with cl, glu, gol, na, po4 |
Domain d3s9eb_: 3s9e B: [216258] automated match to d4igra_ complexed with cl, glu, gol, na, po4 |
Domain d3u92a_: 3u92 A: [217230] automated match to d3u93b_ complexed with cl, kai, zn |
Domain d3u92b_: 3u92 B: [217231] automated match to d3u93b_ complexed with cl, kai, zn |
Domain d3u93a_: 3u93 A: [200944] automated match to d3u93b_ complexed with cl, glu, zn |
Domain d3u93b_: 3u93 B: [193486] automated match to d1ycjb_ complexed with cl, glu, zn |
Domain d3u94a_: 3u94 A: [217232] automated match to d3u93b_ complexed with cl, glu, so4, zn |
Domain d3u94b_: 3u94 B: [217233] automated match to d3u93b_ complexed with cl, glu, so4, zn |
Domain d3u94c_: 3u94 C: [217234] automated match to d3u93b_ complexed with cl, glu, so4, zn |
Domain d3u94d_: 3u94 D: [217235] automated match to d3u93b_ complexed with cl, glu, so4, zn |
Domain d4bdla_: 4bdl A: [219447] automated match to d2znta_ complexed with glu, na |
Domain d4bdlb_: 4bdl B: [219448] automated match to d2znta_ complexed with glu, na |
Domain d4bdna_: 4bdn A: [219449] automated match to d2znta_ complexed with glu, na |
Domain d4bdnb_: 4bdn B: [219450] automated match to d2znta_ complexed with glu, na |
Domain d4bdnc_: 4bdn C: [219451] automated match to d2znta_ complexed with glu, na |
Domain d4bdnd_: 4bdn D: [219452] automated match to d2znta_ complexed with glu, na |
Domain d4bdoa_: 4bdo A: [219453] automated match to d2znta_ complexed with glu, kai, na |
Domain d4bdob_: 4bdo B: [219454] automated match to d2znta_ complexed with glu, kai, na |
Domain d4bdoc_: 4bdo C: [219455] automated match to d2znta_ complexed with glu, kai, na |
Domain d4bdod_: 4bdo D: [219456] automated match to d2znta_ complexed with glu, kai, na |
Domain d4bdqa_: 4bdq A: [219457] automated match to d2znta_ complexed with glu, na |
Domain d4bdqb_: 4bdq B: [219458] automated match to d2znta_ complexed with glu, na |
Domain d4bdra_: 4bdr A: [219459] automated match to d2znta_ complexed with cl, kai, na |
Domain d4bdrb_: 4bdr B: [219460] automated match to d2znta_ complexed with cl, kai, na |
Domain d4dlda_: 4dld A: [219843] automated match to d1ycjb_ complexed with cl, gol, so4, tzg |
Domain d4dldb_: 4dld B: [219844] automated match to d1ycjb_ complexed with cl, gol, so4, tzg |
Domain d4e0wa_: 4e0w A: [220136] automated match to d4igra_ complexed with cl, k, kai |
Domain d4e0xa_: 4e0x A: [220137] automated match to d1ycjb_ complexed with cl, kai, so4 |
Domain d4e0xb_: 4e0x B: [220138] automated match to d1ycjb_ complexed with cl, kai, so4 |
Domain d4g8na_: 4g8n A: [221785] automated match to d4igra_ complexed with cl, g8m, k |
Domain d4igra_: 4igr A: [193229] automated match to d1ycjb_ complexed with 3za, cl, k, po4 |
Domain d4jwxa_: 4jwx A: [197200] automated match to d2a5tb_ complexed with 1n4 |
Domain d4jwya_: 4jwy A: [197199] automated match to d2a5tb_ complexed with 1n4 |
Domain d4kcda_: 4kcd A: [227583] automated match to d2rc9b_ complexed with gol |
Domain d4kcdb_: 4kcd B: [227584] automated match to d2rc9b_ complexed with gol |
Domain d4lz5a_: 4lz5 A: [229654] automated match to d4lz5b_ complexed with 1yv, glu, zn |
Domain d4lz5b_: 4lz5 B: [229429] automated match to d3s9eb_ complexed with 1yv, glu, zn |
Domain d4lz5c_: 4lz5 C: [229655] automated match to d4lz5b_ complexed with 1yv, glu, zn |
Domain d4lz7a_: 4lz7 A: [229652] automated match to d4lz5b_ complexed with 1yw, glu, zn |
Domain d4lz7b_: 4lz7 B: [229653] automated match to d4lz5b_ complexed with 1yw, glu, zn |
Domain d4lz7c_: 4lz7 C: [229648] automated match to d4lz5b_ complexed with 1yw, glu, zn |
Domain d4lz8a_: 4lz8 A: [229651] automated match to d4lz5b_ complexed with 1yx, glu, zn |
Domain d4lz8b_: 4lz8 B: [229649] automated match to d4lz5b_ complexed with 1yx, glu, zn |
Domain d4lz8c_: 4lz8 C: [229650] automated match to d4lz5b_ complexed with 1yx, glu, zn |
Domain d4mh5a_: 4mh5 A: [228397] automated match to d3s9ea_ complexed with cl, ggl, gol, k |
Domain d4nf4b_: 4nf4 B: [237674] Other proteins in same PDB: d4nf4a_ automated match to d2rc9b_ complexed with 2jk, glu |
Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from c.94.1.0 automated matches: