Lineage for d2gycd1 (2gyc D:2-178)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2524908Fold d.77: RL5-like [55281] (1 superfamily)
    beta-alpha-beta(2)-alpha-beta(3)-alpha; 2 layers, alpha/beta; antiparallel beta-sheet: order 231654
  4. 2524909Superfamily d.77.1: RL5-like [55282] (3 families) (S)
  5. 2524910Family d.77.1.1: Ribosomal protein L5 [55283] (1 protein)
  6. 2524911Protein Ribosomal protein L5 [55284] (5 species)
    synonym: 50S ribosomal protein L5p, HMAL5, HL13
  7. 2524922Species Escherichia coli [TaxId:562] [160488] (29 PDB entries)
    Uniprot P62399 1-178
  8. 2524949Domain d2gycd1: 2gyc D:2-178 [145264]
    Other proteins in same PDB: d2gyc11, d2gyc31, d2gyc32, d2gyc51, d2gyc52, d2gycb1, d2gycc1, d2gycf1, d2gycf2, d2gycg1, d2gycg2, d2gych1, d2gyci1, d2gycj1, d2gyck1, d2gycm1, d2gycn1, d2gyco1, d2gycq1, d2gycs1, d2gyct1, d2gycu1, d2gycw1, d2gycx1
    protein/RNA complex
    protein/RNA complex

Details for d2gycd1

PDB Entry: 2gyc (more details), 15 Å

PDB Description: Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
PDB Compounds: (D:) 50S ribosomal protein L5

SCOPe Domain Sequences for d2gycd1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]}
klhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaaisg
qkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsaksf
dgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfrk

SCOPe Domain Coordinates for d2gycd1:

Click to download the PDB-style file with coordinates for d2gycd1.
(The format of our PDB-style files is described here.)

Timeline for d2gycd1: