SCOPe 2.07: Structural Classification of Proteins

PDB entry 3din

View 3din on RCSB PDB site
Description: Crystal structure of the protein-translocation complex formed by the SecY channel and the SecA ATPase
Class: membrane protein, protein transport
Keywords: protein translocation, membrane protein, ATPase, ATP-binding, Inner membrane, Nucleotide-binding, Protein transport, Transport, Transmembrane
Deposited on 2008-06-20, released 2008-10-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 4.5 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Protein translocase subunit secA
Species: Thermotoga maritima MSB8 [TaxId:243274]
Gene: secA, TM_1578
Database cross-references and differences (RAF-indexed):
- Uniprot Q9X1R4 (0-End)
Domains in SCOPe 2.07: d3dina1, d3dina2, d3dina3, d3dina4
Chain 'B':
Compound: Protein translocase subunit secA
Species: Thermotoga maritima MSB8 [TaxId:243274]
Gene: secA, TM_1578
Database cross-references and differences (RAF-indexed):
- Uniprot Q9X1R4 (0-End)
Domains in SCOPe 2.07: d3dinb1, d3dinb2, d3dinb3, d3dinb4
Chain 'C':
Compound: Preprotein translocase subunit secY
Species: Thermotoga maritima MSB8 [TaxId:243274]
Gene: secY, TM_1480
Database cross-references and differences (RAF-indexed):
- Uniprot Q9X1I9
Domains in SCOPe 2.07: d3dinc_
Chain 'D':
Compound: Preprotein translocase subunit secE
Species: Thermotoga maritima MSB8 [TaxId:243274]
Gene: secE, TM_0452
Database cross-references and differences (RAF-indexed):
- Uniprot P35874 (Start-64)
Domains in SCOPe 2.07: d3dind_
Chain 'E':
Compound: Preprotein translocase subunit secG
Species: Thermotoga sp. [TaxId:126740]
Gene: secG, TRQ2_0456
Database cross-references and differences (RAF-indexed):
- Uniprot B1L914
Domains in SCOPe 2.07: d3dine_
Chain 'F':
Compound: Preprotein translocase subunit secY
Species: Thermotoga maritima MSB8 [TaxId:243274]
Gene: secY, TM_1480
Database cross-references and differences (RAF-indexed):
- Uniprot Q9X1I9
Domains in SCOPe 2.07: d3dinf_
Chain 'G':
Compound: Preprotein translocase subunit secE
Species: Thermotoga maritima MSB8 [TaxId:243274]
Gene: secE, TM_0452
Database cross-references and differences (RAF-indexed):
- Uniprot P35874 (Start-64)
Domains in SCOPe 2.07: d3ding_
Chain 'H':
Compound: Preprotein translocase subunit secG
Species: Thermotoga sp. [TaxId:126740]
Gene: secG, TRQ2_0456
Database cross-references and differences (RAF-indexed):
- Uniprot B1L914
Domains in SCOPe 2.07: d3dinh_
Heterogens: MG, ADP, BEF

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3dinA (A:)
milfdknkrilkkyakmvskinqiesdlrskknselirlsmvlkekvnsfedadehlfea
falvreaarrtlgmrpfdvqvmggialhegkvaemktgegktlaatmpiylnaligkgvh
lvtvndylarrdalwmgpvylflglrvgvinslgksyevvwknpdlarkaieenwsvwpd
gfngevlkeesmnkeaveafqvelkeitrkeaylcdvtygtnnefgfdylrdnlvldynd
kvqrghfyaivdeadsvlideartpliisgpskespsvyrrfaqiakkfvkdkdftvdek
artiilteegvakaekiigvenlydpgnvsllyhlinalkalhlfkkdvdyvvmngevii
vdeftgrllpgrrysgglhqaieakegvpikeesityatitfqnyfrmyeklagmtgtak
teesefvqvygmevvvipthkpmirkdhddlvfrtqkekyekiveeiekrykkgqpvlvg
ttsieksellssmlkkkgiphqvlnakyhekeaeivakagqkgmvtiatnmagrgtdikl
gpgvaelgglciigterhesrridnqlrgragrqgdpgesifflsleddllrifgseqig
kvmnilkieegqpiqhpmlsklieniqkkveginfsirktlmemddvldkqrravyslrd
qillekdydeylkdifedvvstrveefcsgknwdieslknslsffpaglfdldekqfsss
eelhdylfnrlweeyqrkkqeigedyrkvirflmlriiddhwrryleevehvkeavqlrs
ygqkdpivefkketyymfdemmrrindtianyvlrvvkvsekdekeakeelgkirlvhee
fnlvnramrratekkkkkdglhsfgrirvkr